| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2298 |
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| Symbol | rpsA |
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| ID | 5611064 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2781817 |
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| End bp | 2783484 |
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| Gene Length | 1668 bp |
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| Protein Length | 555 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640933208 |
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| Product | 30S ribosomal protein S1 |
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| Protein accession | YP_001474035 |
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| Protein GI | 157375435 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0539] Ribosomal protein S1 |
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| TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000000879863 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.000000000196055 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | ATGACTGAAT CTTTTGCTGA TCTATTTGAA CAATCCCTAA CTGAACTTGA GTTCCGTCCT
GGTTCTATCG TAACTGGTAT AGTTGTATCT ATCCAGAACG GTATGGTACT AGTTGACGCT
GGTCTTAAGT CTGAAAGCCC AATCCCAGCT GAACAGTTCA AGAACGACCA AGGCGAACTT
GAAATCTCTG TTGGTGATTC TGTTGCTGTT GCACTTGACT CTGTTGAAGA CGGTTTCGGT
GAAACTCAAC TGTCTCGTGA GAAAGCTAAG CGTCACGAAG CATGGATTGT TCTAGAAAAA
GCGTACGAAG ATGCTGAAAC TGTAATCGGT GTCATTAATG GTAAGGTTAA AGGCGGTTTC
ACTGTTGAAT TAAACGGTAT CCGTGCATTC CTACCTGGTT CTCTAGTTGA CGTTCGCCCA
GTTCGCGATA CTGCTCACCT AGAAAACAAA GATCTAGAAT TTAAAGTTAT CAAGTTAGAC
CAGAAGCGCA ACAACGTTGT TGTTTCTCGT CGTGCTGTTA TCGAATCTGA AAGCAGTGCA
GAGCGTGATG CTCTTCTTGA GAACCTACAA GAAGGTCAAT CAGTTAAGGG TATCGTTAAG
AACCTTACTG ACTACGGTGC ATTCGTAGAC CTAGGTGGCG TTGACGGTCT ACTACATATC
ACTGATATGG CGTGGAAGCG TGTTAAGCAC CCATCTGAAA TCGTAAACGT TGGTGACGAA
ATCAATGTTA AAGTTCTTAA GTACGATCGT GAGCGCACTC GTGTTTCACT AGGTCTTAAG
CAACTTGGCG AAGATCCATG GTTAGAAATC AGCAAGCGCT ACCCAGAAAA CACACGTTTG
ACTGGTCGCG TTACTAACCT AACTGACTAC GGTTGTTTCG TTGAAATCGA AGAAGGCGTT
GAAGGTCTTG TTCACGTTTC TGAAATGGAT TGGACTAACA AGAACATCCA CCCATCTAAA
GTTGTTAACT TAGGTGATGA AGTTGAAGTT CTAGTTCTAG ACATTGACGA AGAGCGTCGT
CGTATTTCTC TAGGTCTTAA GCAGTGTAAA GTTAACCCAT GGGATGACTT CGCCGAGCGT
TTCCAGAAAG GCGACAAGGT TTCTGGTAAG ATCAAGTCAA TCACTGACTT CGGTATCTTT
ATCGGTCTTG ACGGCGGCAT CGACGGTCTT GTTCACCTAT CTGATATTTC TTGGAATGGT
ACTGGCGAAG AAGCTGTTGC TGAATACAAG AAAGGCGACG AGATCAACGC AGTTGTTCTT
TCAGTTGACC CAGAGCGTGA GCGCATCAGC TTAGGCGTTA AGCAAACTGA AGACGATCCA
TTCAATGCTT ATCTTGCAGA TAAGAAGAAA GGAACTGTTG TTAACGGTAC AGTTACTGCA
GTAGACGCTA AAGGCGTAAC TATTGAACTA GCTGACACTG TTGAAGGTTA CTTACGTGTA
GCTGATATCT CTCGCGAGCG TATCGAAGAT GCATCTACTG TTTACTCTGT AGGCGACGCT
GTTGAATCTA AGTTCATGGG TGTTGACCGT AAGAACCGTA CTATCAGCCT ATCTATCCGT
GCGAAAGATG AAGCTGAAGA GAAAGAAGCA ATGGCTAGCT TGAACAAGCA AGAAGACGCT
GTGATGAGCA GTGCTATGGC TGAAGCGTTC AAAGCAGCTC GCAAGTAA
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| Protein sequence | MTESFADLFE QSLTELEFRP GSIVTGIVVS IQNGMVLVDA GLKSESPIPA EQFKNDQGEL
EISVGDSVAV ALDSVEDGFG ETQLSREKAK RHEAWIVLEK AYEDAETVIG VINGKVKGGF
TVELNGIRAF LPGSLVDVRP VRDTAHLENK DLEFKVIKLD QKRNNVVVSR RAVIESESSA
ERDALLENLQ EGQSVKGIVK NLTDYGAFVD LGGVDGLLHI TDMAWKRVKH PSEIVNVGDE
INVKVLKYDR ERTRVSLGLK QLGEDPWLEI SKRYPENTRL TGRVTNLTDY GCFVEIEEGV
EGLVHVSEMD WTNKNIHPSK VVNLGDEVEV LVLDIDEERR RISLGLKQCK VNPWDDFAER
FQKGDKVSGK IKSITDFGIF IGLDGGIDGL VHLSDISWNG TGEEAVAEYK KGDEINAVVL
SVDPERERIS LGVKQTEDDP FNAYLADKKK GTVVNGTVTA VDAKGVTIEL ADTVEGYLRV
ADISRERIED ASTVYSVGDA VESKFMGVDR KNRTISLSIR AKDEAEEKEA MASLNKQEDA
VMSSAMAEAF KAARK
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