| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2292 |
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| Symbol | |
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| ID | 5611478 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2776424 |
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| End bp | 2778181 |
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| Gene Length | 1758 bp |
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| Protein Length | 585 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640933202 |
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| Product | acyl-CoA dehydrogenase domain-containing protein |
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| Protein accession | YP_001474029 |
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| Protein GI | 157375429 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1960] Acyl-CoA dehydrogenases |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.00000293034 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.0000000044095 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAATCCGT ACCAAGCTCC GTTAGCCGAA ATGAAGTTTA TGTTAGATAA GGTCTTTGAT
GCGCCAAATA CATGGGCGTC ATTACCTGCC ATAGCCGAAA ATGTCGATAT GGACACAGCG
GTAGCGATAA TGGATGAAGC AGACAAGATA AGTCGTGAAC TTATACATCC TATTAACCGT
AGCGGTGATG AGCAAGGTGT AAGGCATGAA GATGATAAGG TGATCACGCC TGACGGCTTT
AAAGCCGTCT ATGACCAATA TGCTGAAGGT GGCTGGGTTG GCTTATGCGG CGACCCTGAA
CTGGGTGGTA TGGGCATGCC GAAGATGTTG GGCGTGCTGG TAGATGAGAT GTCTTATAGT
GCCTGTAACT CTTTTACCCT TTACGGTTCA CTCACCGCCG GCGCAGCCTT GTGTATCAAT
GCACATGGCA GTGATGAGCT AAAAGAGAAA TATCTGCCTA TGCTGTATAG CGGCGAATGG
GCTGGTGCGA TGGATATGAC CGAACCTCAG GCGGGGTCAG ATCTGCGAAA TATTCGTACT
AAAGCGGTCC CTAACGATGA TGGCAGCTAT AACATCACGG GCAGCAAGAT TTTTATCACC
GGCGGCGATC ATGATCTGAC GGAGAATGTC ATCCACCTGG TATTGGCAAA GCTACCCGAC
TCGAACGGTA TATCTCTATT CTTAGTGCCA AAAATCAAGG TAGATGACTC AGGTAACTTA
GGTGAGTCAA ATGGCGTAAC AGTGGGTTCA ATCGAGCATA AAATGGGGCT AAAAGCCTCC
GCCACATGTG TGATGAACTA TGATGATGCT CAAGGTTATC TTATCGGTAG ACCTAACCGT
GGACTCGTCT GCATGTTTAC TATGATGAAC TATGAGCGTC TGGCCATTGG TATTCAGGGG
TTGGGAACCT CCCAAGCGGC ATACCAGATG GCTTCCGATT ATGCTAAAGA GCGTGTTCAG
GGCGTGGCAG CAGGCGGATC GCCAACCGGC GCAACCTGCG ATCCAATCCT GGTTCATGGT
GATGTCCGTC GTATGCTTCT TAATATCAGA ACCTTGACCG AGGCGGGCCG AGCCCTCTCC
ATATTGACCG GTAAGCAGCT TGATATTGCA AAGTACGGTG AGGGAGAGGA CAAGGCTAAA
GCGGCGCGTT ATGTCGGCTT GTTAACCCCA GTTGCTAAGG CATTTCTCAG TGACCGTGGA
CTGGATGCCG CAATCATGGC CCAGCAAGTG TTTGGTGGGC ACGGTTATAT ACGTGAAACG
GGTATCGAAC AACTCGTACG TGATACCCGT ATTGCTCAAA TATATGAAGG GACAAACGGC
ATTCAAGCCA TAGATTTCTT AGGCCGCAAG GTGACAGGAG ATAATCTGGC GGCACTGACT
GAGTTTGTTA CCGAGTGCAA TGAGAAGCTA TCTCAAATGA CTCATGTCGA TGATGCTCAT
AAGGAGAAAG TGGCATCACT GTTCAACCAG TTACTGGCCG TTGCAGATAC CGTTAATGAC
AACAAGATTT CGAGCCCAGC ACTCATCAAC ACTTGTGCCG TCGATTTCCT CGATGCGTTT
GGCCATATCC TCTACGGGTA TTTCTGGTTG CTGATGACGG ACACAGCTGC AGTTCATGAA
GATGAAAAGT TTACGGCGCA AAAACGTCAC TTAAGCGACT TCTATATCAA TAAGGTACTT
CCTAAGGCTG AGTATCACCT TGCACAGGTC AGTGCCGGGG ATGTTTGTGT CATGAATATC
CCTGAAGAGA CGTTCTGA
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| Protein sequence | MNPYQAPLAE MKFMLDKVFD APNTWASLPA IAENVDMDTA VAIMDEADKI SRELIHPINR
SGDEQGVRHE DDKVITPDGF KAVYDQYAEG GWVGLCGDPE LGGMGMPKML GVLVDEMSYS
ACNSFTLYGS LTAGAALCIN AHGSDELKEK YLPMLYSGEW AGAMDMTEPQ AGSDLRNIRT
KAVPNDDGSY NITGSKIFIT GGDHDLTENV IHLVLAKLPD SNGISLFLVP KIKVDDSGNL
GESNGVTVGS IEHKMGLKAS ATCVMNYDDA QGYLIGRPNR GLVCMFTMMN YERLAIGIQG
LGTSQAAYQM ASDYAKERVQ GVAAGGSPTG ATCDPILVHG DVRRMLLNIR TLTEAGRALS
ILTGKQLDIA KYGEGEDKAK AARYVGLLTP VAKAFLSDRG LDAAIMAQQV FGGHGYIRET
GIEQLVRDTR IAQIYEGTNG IQAIDFLGRK VTGDNLAALT EFVTECNEKL SQMTHVDDAH
KEKVASLFNQ LLAVADTVND NKISSPALIN TCAVDFLDAF GHILYGYFWL LMTDTAAVHE
DEKFTAQKRH LSDFYINKVL PKAEYHLAQV SAGDVCVMNI PEETF
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