| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2291 |
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| Symbol | |
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| ID | 5611477 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2774783 |
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| End bp | 2776240 |
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| Gene Length | 1458 bp |
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| Protein Length | 485 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640933201 |
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| Product | Serine-type D-Ala-D-Ala carboxypeptidase |
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| Protein accession | YP_001474028 |
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| Protein GI | 157375428 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2027] D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) |
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| TIGRFAM ID | [TIGR00666] D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0375512 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.0000021051 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAAAAGT TAACTTCTGC CCTACTCCTA TATTGGCTTT CCACTTCGAC AGCCTGCGCT
GATGAGTATT TCAGTAATAT ATTGTCTCTG ATTAAGCCTC CTCACTCTCA CACCTCTGTT
ATAGCAACTG ATCTGGTCAA TGACTCCGTC ATTTACGAGG AAAATGCCGA TATTTTACTT
CTGCCTGCCA GTACTCAAAA GTTGCTCACC GCAGTTGCCG CAACTGCAGC TCTTGGAAAT
CAGTTTAATT ATAAGACTGA AATTTATTCT CATTTTCCGA TCCGAAACGG TAAGATTATG
GGTGATGTTT TTATTAAATT TAGTGGCGAT CCGACACTGA CTAGTCTTGA GCTAAGAGAA
CTGTTTAAAC AACTAACGGA TCAGGGCCTG CTTCAAATAG AGGGGGATCT CTATCTCGTC
GGCGAGAAAC ATGAAGAGTT ACAAGCACCC GGTTGGGTAT GGGATGACTT AGGGATCTGT
TTTGCCGCTC CCGTATCCAG TTTTATTATC AATAAAAACT GTGTACATGG GCAACTAAAA
CCAACACTTG CTAGTAGTGC CAGTCAAATC CAATTCCCCA GCTATCTTCC GGTGATTATC
GATAATAGTG CCATTTTTGA TAAAAACAGT ACCCTTGAAT TTTGTAATTT GAGTCTACAG
CGTCTAACCA ATAATCACTT TAATCTAACG GGCTGTCACT CCGGAAATCG TCCCTTAAAA
CTCGCCATAG CCATAACTGA ACCAGCCTTG TTTGCAAGAG ATACCGTGGC TCAGATTGCG
AAGAGTAGTC AAATCAAGGT AACAGGTAAG ATATTACTCA AAGACACCTT GCCACAACAT
CGCAGCCTTA TTGCCAGCCA TCAGTCAAAA GCGCTGCCTG AGATGCTCAA TACCATGTTA
GTCAAATCTG ATAACCTCAT CGCGGATAGC TTATTGAAGC AGATAGGACA CAAGCAGTAT
AACCGTCCCG GCACCTTTAC TAATGGCAGC AAGGCGATGG TTCAGATTTT GACTGAAGAA
GGTGTCGATC TGACCCACGC CAGAATTGTG GATGGTTCGG GGCTATCGCG TTATAACTTG
CTTAGTGCCA GACAGCTCAG TCAGGTATTG AGGTTAATCT ATACAGATCC GAGATTTATG
AGTCTCATGG AATCACTACC TGTCGCAGGT ATCAGTGGCA CCCTCAAATA CAAACCATCA
TTTACCAGCG CCCCACTTCG AAAATATGTT TGGGCAAAGA CAGGGTCTAT GCAGGGCGTT
GATAACTTGG CTGGTTTTAT CAAGAAGCCC AAGACAGACG ATATGCTGTT TGTCATTTTA
GAAAATGGAC AGAGCCCGAT AGAGAAGGAG CAGCAACTTG CACCATTCAG TGCCCTTTTC
TTGCAGACCT TACTGGACCA CACCGCAGCG CCCACAGAGC TCAATGCGAC GACGGCCAAG
TCAGTAATAG CGAATTAA
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| Protein sequence | MKKLTSALLL YWLSTSTACA DEYFSNILSL IKPPHSHTSV IATDLVNDSV IYEENADILL
LPASTQKLLT AVAATAALGN QFNYKTEIYS HFPIRNGKIM GDVFIKFSGD PTLTSLELRE
LFKQLTDQGL LQIEGDLYLV GEKHEELQAP GWVWDDLGIC FAAPVSSFII NKNCVHGQLK
PTLASSASQI QFPSYLPVII DNSAIFDKNS TLEFCNLSLQ RLTNNHFNLT GCHSGNRPLK
LAIAITEPAL FARDTVAQIA KSSQIKVTGK ILLKDTLPQH RSLIASHQSK ALPEMLNTML
VKSDNLIADS LLKQIGHKQY NRPGTFTNGS KAMVQILTEE GVDLTHARIV DGSGLSRYNL
LSARQLSQVL RLIYTDPRFM SLMESLPVAG ISGTLKYKPS FTSAPLRKYV WAKTGSMQGV
DNLAGFIKKP KTDDMLFVIL ENGQSPIEKE QQLAPFSALF LQTLLDHTAA PTELNATTAK
SVIAN
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