| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2287 |
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| Symbol | emrD |
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| ID | 5611494 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2770648 |
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| End bp | 2771874 |
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| Gene Length | 1227 bp |
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| Protein Length | 408 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640933197 |
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| Product | multidrug resistance protein D |
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| Protein accession | YP_001474024 |
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| Protein GI | 157375424 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | [TIGR00880] Multidrug resistance protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.754315 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0000100188 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAACGGCC CTTTGATGAA GTCAAACCCA AGCCAGAATA ACCCGGGTTT TTCCTCACTT
ATCTTTCTGA TTGTGATGAT GGTTGCCTGT GGTCAAATGG CACAGACGAT ATTTGTACCC
GCCCTGCCGG CAATCGCAGA CAGTTTCACA GTTACTGCCG GACAACTGCA AGCGATCATG
GCCTGCTATC TACTCTCCTA TGGTCTGCTC CAGTTTGTTT ATGGACCTGC GTCAGACCGT
TTGGGTCGTA AGCCACTGCT CATCTTTGGC TTGTCACTGT TTGTCATTGG CGCTTTACTG
GCGAGTGTAG CAACAAGCTA TAGCGAGCTT ATCGCCGCCA CCTTGCTTCA GGGCATGGGA
ACGGCCAGTG CCGGTGCATT ATGCAGGAGC ATTCCAAGGG ATCACTATTT TGGCGAGCCA
TTGGTATCAC TGAACAGTTA TATCTCGATG GCCGTCATAT TTTCGCCACT TCTTGCACCT
TTTGCAGGCG GTATGATGAC ACACTACTTT GGCTGGCAGT CTGTGTACTC ACTGTTGGCA
GGCTTTGGTG CCCTAGTACT GCTTTTGGTT ATATTCAGAC TTAAGGAGTC GCTCCCTGCG
GATAAGCGTA AGCCTGAGTC AATCATGAGC TCATACCGGT TTGTGTTAGC CCATAGAAAG
TTTAAAAGCT ATCTGCTTTG TCTCGTGGCC ACATTTTCAG GTATTGCGGC ATTTGAGGCC
GTTGCCGGCG TGCTCTACGG CCAGGTATTA GCACTATCTC CTTTTTGGGT CAGCATATAC
TTTGTTGCTC CGATCCCCGG TTACCTTGCC GGAGCCTATT ATGCGGCGAA GTTAAAAGAT
AATAATAAGA GTACCTATCG AAGCGTTGCC CTACTGGGTT CGGGCGCACT CTTCCTGCTT
ATCCCAGGCC TGTCCGACCT GGTTATTGGC TGGAGCTTAC TCGTGGGCTC GGTGTTGTTC
TTTACCGGAG CTGGGATACT GTTCCCGGTA TTAACGTCGG CGGCATTAGA GCCATTTCCC
AGACACGCCG GTGTGGCCGG AGCACTGTTG GGTGGCTTGC AAAATTTTGG TGCCGGTGTG
GCAGCCCTGC TCATGTCCTT AGTGCCAATG CACGGACAAC TCAGCATCGG GGGATTGTGT
GCCTTGATGG TGATGTTAGT GATACTGGCA CTGAACTATG CCAGGTCGGG TACGGATCTG
GATAAGAGTG ATGTGGCGGT GTTGTAA
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| Protein sequence | MNGPLMKSNP SQNNPGFSSL IFLIVMMVAC GQMAQTIFVP ALPAIADSFT VTAGQLQAIM
ACYLLSYGLL QFVYGPASDR LGRKPLLIFG LSLFVIGALL ASVATSYSEL IAATLLQGMG
TASAGALCRS IPRDHYFGEP LVSLNSYISM AVIFSPLLAP FAGGMMTHYF GWQSVYSLLA
GFGALVLLLV IFRLKESLPA DKRKPESIMS SYRFVLAHRK FKSYLLCLVA TFSGIAAFEA
VAGVLYGQVL ALSPFWVSIY FVAPIPGYLA GAYYAAKLKD NNKSTYRSVA LLGSGALFLL
IPGLSDLVIG WSLLVGSVLF FTGAGILFPV LTSAALEPFP RHAGVAGALL GGLQNFGAGV
AALLMSLVPM HGQLSIGGLC ALMVMLVILA LNYARSGTDL DKSDVAVL
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