| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2278 |
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| Symbol | |
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| ID | 5611752 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2755703 |
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| End bp | 2756743 |
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| Gene Length | 1041 bp |
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| Protein Length | 346 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640933188 |
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| Product | porin |
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| Protein accession | YP_001474015 |
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| Protein GI | 157375415 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3203] Outer membrane protein (porin) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.134296 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.609479 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAACAT TTACCCTTTC GCTGTTAGCA ACCAGTATGC TGATATCACC ACAGATTTTG
GCGGACGATC TACTTAAGTT CTATGGCCGA ATCGATTACT CAGTTACCAA TTCAGACAGT
GGCTCTGCGA CTCATAATGG AAAGAGCGGT ACCGTGCTGG AGAATAACTG GAGCCGTTTA
GGTGTCAAAG GCAGCAGCGA GATAATGGAT GACACCGAGA TTTTTTATCA AATTGAGGTG
GGCGTCAACG GTGCTTCTCA AGATAAAGGA AAGAATCCTT TTTCATCCAG GCCCACCTTT
ATCGGTATTA AACACGCCTC GGTCGGCCAA CTGGCTGCTG GTCGCATCGA TCCGGTCTTT
AAGATGGCTA AAGGCACTGC CGATGCCATG GACATGTATT CGATGAAACA TGATCGCCTA
TTTGCCGGTG ACAAACGCTG GGGTGATTCA TTAGAGTACA AGAGCGTTAA ATGGAACAAG
TTACAGTTGG GCGCCAGCTA CATCATGGAA GATAACTATT ATGGTGAGGA TGATCTTCGC
CGTGATAACG GCAACTATCA ATTAGCTCTT ACCTATGGTG ATAAACATTT CAGAAGTAGT
AACCTCTATC TGGCCGCTGC TTACACCGAT GGTGTTGAAG ATATCAAAGG TTACCGCGGC
GTCGTGCAAT ACAAGTACGG CAACTTAATG CTTGGCTCTA TCTATCAAGC TTCTGAGCTG
GTAAACCCCT ACAAGACCAA CTGGGAACAG CGCGATGGCT CAGGCTTTAT AGTCAGTGCC
AAGTATCAAA TCGACAAGCT TCTACTTAAA GCACAATACG GTCAGGATGA TTCGGGTACC
GGTAGAATCG CAGCAAAAGT CTATGATAAA TATGGTGAGT CAGTGACGCA GACCCCTGAA
GTTTCGCAGT GGGCAGTCGG TGCTGAGTAC CGAGTATCTA AATCAACCCG CCTTCATACC
GAAATTGGCC AGTTTGATGT TGAGCAATTC GATGACTTCG ATGACACTAT CGTCAGTGTC
GGTGTTCGTT ACGACTTCTA A
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| Protein sequence | MKTFTLSLLA TSMLISPQIL ADDLLKFYGR IDYSVTNSDS GSATHNGKSG TVLENNWSRL
GVKGSSEIMD DTEIFYQIEV GVNGASQDKG KNPFSSRPTF IGIKHASVGQ LAAGRIDPVF
KMAKGTADAM DMYSMKHDRL FAGDKRWGDS LEYKSVKWNK LQLGASYIME DNYYGEDDLR
RDNGNYQLAL TYGDKHFRSS NLYLAAAYTD GVEDIKGYRG VVQYKYGNLM LGSIYQASEL
VNPYKTNWEQ RDGSGFIVSA KYQIDKLLLK AQYGQDDSGT GRIAAKVYDK YGESVTQTPE
VSQWAVGAEY RVSKSTRLHT EIGQFDVEQF DDFDDTIVSV GVRYDF
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