| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2277 |
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| Symbol | |
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| ID | 5611751 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2753629 |
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| End bp | 2755548 |
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| Gene Length | 1920 bp |
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| Protein Length | 639 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640933187 |
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| Product | Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF |
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| Protein accession | YP_001474014 |
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| Protein GI | 157375414 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG2871] Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF |
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| TIGRFAM ID | [TIGR01941] NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.52996 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.712445 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATCTGA TTAAAACATT TCATAAATGG CTATCTCTTC TTGTGGGTCT ACAGCTGCTC
ATCTGGCTGG GCACAGGTTT GTATTTCAAC CTGATGGATC ATGATAAGGC CTCGGGCAAT
CAACACAGGC AAAGGGTTGA GAGCCCGGCC GTTGATCTTC ACCTGCTTAT GGAGCCTAAA
ACCGTGTTAC GGGAATACGA TAATACCGTC TCTATGAGCT TGATAACCAT ACTTTCTCAT
CCATACTACC TGCTGGCCCA TGAGAAAGGG TTATACCGTC ATTTCAAGAG TCGCTATTCA
ATGGTCAATG CCGTCACCGG CAAACCTTTT AGTATCACTA AGACCATAGC TACCGCCATC
GCGCTGGAGT CCTATAAGGG GGCGGCAACT GTCGCTTCTG CAGTTGAGCT CACAGGACCG
AGTGACGATT TCCCCAAAGA GCAAAACAGC TTGTGGCAGG TAAACATCGA TGATGACCTC
AATACTAGTG TCTATGTCGA TGCGGGTTCT GGCCGACTGA TAGGACACAG TAATGATGAT
AAACGATTCG TCGATTTTAT CTTTATGCTC CACTTTATGG ATTACGCTGG CGAGGGCAGT
TTTAACAATG TTCAGGTTAT CGTTTTCGCC ATTTTCACGC TCTTTTTCTC CTTAACCGGT
CTTATCTGGA TGGTCGAGCT GGGGTTCAAC GGCCAATATA AACCTGCTTT GCTCTTTGGT
CGTAACATGG CTAAGACCAG GAAGGTAAAG ATATTCGATA AGCACTCCAA AAGCCTGGGG
CCGCTTGCCA TGTCTGCTCA TGAAAACCTG CTCGACAGTT TGCTCAATCA CGATATTGCC
CTCCCCTCGA CCTGTGGCGG TGGCGGCACA TGTGGTCGCT GTAAGATAAA GGTTGATCTT
AATATCAAGA TGACCTCGGC TGATAAGAGT CAGTTGACCG AGCAAGAGTT GCAGGCCGGT
TATCGTTTAG CCTGTCAGCA TAACAGCGAT GAGCTTGAGC AGTTAACCTT AGTCGATGTG
ACAGAGGCCG AAACTCATGA ATTGGAGTTA ATCAGTAGCG AGTTTATCTC TCCTTATATC
AAGCAGCTGC GCTTTAAGGC TGTGAGCGGA GAAACACTGG AATTCAGGGC CGGTGCATTT
ATGCGTATCT TTATCCCTGC CGCTAAAGGC AGCTCGATTC CGGCGTATCT ACCCGTAGAG
TTGCTGCACC ATTGGCAAGA CGTTATACAC ATGGAATATG AGCACTTAGC CTGCAGTCGT
AACTATTCGC TCGCCAATGG TGATGGTCAG AGCGATGAGC TGGTGTTTAC AGTAAAAATT
CAGACTTCGC CCAACGAGAG GGTTAAACCC GGTATAGGGT CGAGCTACAT CTGCAATCTG
GCCCCGGGGG AAACAATCGA AGCGGTAGGC CCATTCGAAG AGTTTTATGC CCTGCCATCG
AGCAGTAAAC CTATGGTATT GATTGGCGCG GGCTCAGGGA TGGCGCCATT AAAGGCCTTG
ATCGAGGAGC AGCTAATTAA GAACTCCAGT TCGCGGGAAC TCTATTTCTA TTTTGGTGCC
CGCCGTCAGA TAGATCTTAT CTACAGTGAG CACTTTCAAC AACTGTCAGA CCAATACCCA
AACTTTCATT ATCTGCCGGT ACTCTCCAGG CCTGAGCAGG ATTGGTGCGG GGCAACGGGT
TATGTACAGG ACAAGTTAGC GCTGAACCTT CAACAACTAT TACTGGATAA GCAGTTGAAG
GACTGTGATC AGGTAAAGCT AGCATCAAAT CAGCAAGATG TAGAGATTAA GAGCCACCGA
CAGATAGAAA CCGTTGAATT TTACCTCTGC GGACCTGCGC CTATGATGGA ATCGACTATA
GAGTTGTTAG AATCTCATAG CGTTGCCGAT AGTGTTATCG CATTCGATAA GTTTGAATGA
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| Protein sequence | MNLIKTFHKW LSLLVGLQLL IWLGTGLYFN LMDHDKASGN QHRQRVESPA VDLHLLMEPK
TVLREYDNTV SMSLITILSH PYYLLAHEKG LYRHFKSRYS MVNAVTGKPF SITKTIATAI
ALESYKGAAT VASAVELTGP SDDFPKEQNS LWQVNIDDDL NTSVYVDAGS GRLIGHSNDD
KRFVDFIFML HFMDYAGEGS FNNVQVIVFA IFTLFFSLTG LIWMVELGFN GQYKPALLFG
RNMAKTRKVK IFDKHSKSLG PLAMSAHENL LDSLLNHDIA LPSTCGGGGT CGRCKIKVDL
NIKMTSADKS QLTEQELQAG YRLACQHNSD ELEQLTLVDV TEAETHELEL ISSEFISPYI
KQLRFKAVSG ETLEFRAGAF MRIFIPAAKG SSIPAYLPVE LLHHWQDVIH MEYEHLACSR
NYSLANGDGQ SDELVFTVKI QTSPNERVKP GIGSSYICNL APGETIEAVG PFEEFYALPS
SSKPMVLIGA GSGMAPLKAL IEEQLIKNSS SRELYFYFGA RRQIDLIYSE HFQQLSDQYP
NFHYLPVLSR PEQDWCGATG YVQDKLALNL QQLLLDKQLK DCDQVKLASN QQDVEIKSHR
QIETVEFYLC GPAPMMESTI ELLESHSVAD SVIAFDKFE
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