| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2273 |
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| Symbol | |
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| ID | 5611653 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2745709 |
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| End bp | 2749302 |
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| Gene Length | 3594 bp |
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| Protein Length | 1197 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640933183 |
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| Product | putative pyruvate oxidoreductase |
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| Protein accession | YP_001474010 |
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| Protein GI | 157375410 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0674] Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit
[COG1013] Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit
[COG1014] Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit |
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| TIGRFAM ID | [TIGR02176] pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCAAGC AGGTAACCAT AGACGGTGGA GAAGCCACAG CCTTCGTCGC TTATCGTACT
AATGAAGTTT GCGCTATCTA CCCAATCACG CCGTCTTCGA CCATGGCAGA ATTGGCCGAT
CAGTGGGCCA GTCAGAATAT TGAAAATATC TGGCAACAGG TGCCGCTTGT TGCCGAGATG
CAGAGTGAAG GAGGTGCGGC CGGAACCGTA CATGGCGCTC TGCAGACAGG CGCGCTGACC
ACCACCTTTA CCGCCTCTCA GGGACTGATG TTGATGATCC CTAACATGTT TAAGATTGCC
GGCGAGTTAA CGCCCACCGT GTTTCATGTT GCGGCGCGGG CCTTGTCGAC CCAGGGTCTG
TCGATCTTCG GCGATCATCA GGACGTGATG GCGGTACGAA TGACGGGGTT TGCCCAGCTG
GTCTCTTCGT CGGTACAGGA GTGTCATGAC ATGGCACTGG TGTCACAGGC GGTGACACTC
AACTGCCGCG TTCCTTTTAT TCACTTCTTC GATGGCTTTC GTACCTCCCA TGAGGTGAGC
AAGATAGACC TGCTCGAAGA TGAACAGATA AAGACGATGA TCGATGATGA AATGGTTTTT
GCTCATCGTT CGCGGGCACT AAACCCGGAT AACCCCTTCA TGCGTGGCAG TGCACAAAAT
CCGGATACCT ATTTCCAGTC GCGGGAGTCC GCCAGTCGTT ACTATAACGA TGCCGTAGAG
GCGGTAGACG TGGCACTGGA CAGGTTCTAT CAAGTCACAG GTCGCCGATA TCATAGCTTC
GAATACTATG GAGACAAGGA TGCTGAGCGG GTTATTGTCA TCATGGGCTC TGGCAGCGAG
ACGGCGATAA CCACGGCGCA GCATCTCAAC GCACAAGATC ATGTTACGCA AAAGAGTAGA
GTCGGTGTAC TACGGGTGCG CCTGTATCGG CCTTTTAGCT GCGAGCACCT GCTCAAGGCG
TTACCGCAAT CGGTAACAAG TGTCGCCGTG TTAGACAGAA CCAAGGAGCC CGGCAGCGAT
GGCGAGCCTC TATATAAAGA TGTCAGTAAT GCACTCTATC AGGCGGTAAG CAGAGGCGAT
CGTAAAACCA TGCCCGTGGT CATTGGCGGC CGCTATGGTT TAGCCAGCAA AGAGTTCACT
CCTGCCATGG TGGCCAGGGT CTACCAGGAG CTTACAACTA AAGCGCCCAA GAACGATTTC
ACTATCGGTA TCATCGATGA TGTCTGCCAC AGTAGCCTGG AGGTGAAGGA GAGCCTGGAC
ATCGAGTCTG ACAAGCTGGT GCAGGCGATG TTTTATGGTC TGGGCTCCGA CGGTACCGTC
AGCGCCAACA AGAACAGCAT CAAGATCATC GGCGGCGTCG AAGGATACTA CGCCCAGGGG
TATTTCGTTT ATGACTCCAA GAAAGCCGGA TCACAGACGG TTTCTCATCT GCGTTTCGGC
CCCGAGCCTA TTCGCGCGCC CTATCTTATC CAATCGGCAA ACTTTATCGC CTGTCATCAA
TTCAGTTTCA TCAAACATGT GGAGATGCTG GAACGGGCGA AGCAGGGGGC CACTTTCCTC
TTAAATAGTC ACTACGATGC CGATCAGATC TGGGATCAAC TTCCTGCCCA TGTCCAACAG
GAACTACTCG ATAAGCAGAT CAAATTCTAT GTCATCGACG GAGCCAAGGT GGCCCGTTCG
GTCGGCATGG GTAAGCGTAT CAATACCGTG ATGCAAACCT GTTTCTTCGC GCTCTCCGGT
GTGATGCCCA AGGAGCAGGC TATCGAGCGG ATCAAACAGG CGGCAGAAAA AACCTATGCC
AAGAAGGGCG AAGAGGTGGT GAAGCGAAAC TTTGCGGCCA TCGAGCAGGC CCTGGCTCAT
CTGCAGCGGG TTAACTTGCC TCGCAAGGTG AGTAACACCA GCGGTAGGGA GGCCGATGGG
TTATTCGACC GCGCTTCCGG GTTTGTGAAA GAGGTGACCG CCGAGATGTT TCATGGCCGC
GGCGATCGCA TTCCCGTGAG CATGCTACCC GACGACGGCA CCTATCCTAC CGGCACCAGT
CAGTATGAGA AGCGAAGTAT TGCCAGTGAG ATCCCTATCT GGGACAGGGA GATCTGCATT
CAATGCGGTA ACTGCGCCAT TGTCTGTCCC CACGCCGCGA TACGGGCTAA GTTTTATAAC
AAACGTCGGC TGCAGGGAGC GCCAACGACA TTCCCGTCGA GTAATGTCAC ATCCCGTGGC
TTCCCCGATG CACGATACAC CTTGCAGGTT TATGCCGATG ACTGTACCGG TTGCGGCCTG
TGCGTGAAGG CCTGTCCCGT CAACCACACT GCCGACGAAC ATCACCACGC AATTAACATG
CAGAATAAAG AGAAGCATCT GCAGGATGAA CGCAGGAATC TGGAGTTTTT TGAGACCATC
GCCTACAATC GGCGAACCCG GGTCGATTTT TCTAACGTTC GCGGCGTTCA GTTTCTGCAA
CCTCTGTTCG AGTTCTCGGG TGCCTGTAGC GGCTGCGGTG AGACTCCGTA TCTGAAGCTA
CTCAGTCAGC TGTTTGGCGA TCGTATGCTT GTGGCCAACG CGACAGGATG TTCATCGATC
TATGGTGGCA ACTTGCCGAC CACGCCTTGG GCCAAGAACA GCGAAAACAA AGGCCCCGCA
TGGGCGAACT CGCTGTTTGA AGACAATGCC GAGTTTGGGT ATGGCTACCG CCTCACCGCG
GATAAGCACC TCGAGTTGGC GCAATCCAGG CTATTGGCCT TAAAGGAGAG ACTCGATCCT
GAGCTGGTGG AGCAAACGGT TAATGCTCCA CAATCCCATG AATCTGAGAT ACACGAGCAG
CAGGAGCGGG TAAAAGATCT GACAGAGCAG TTACAGACGT TGGACGATCC CAGAGCCAAA
GAGTTGCTGT CGGTTATCGA TCACCTGGTG CGCCGCAGCA TCTGGATAGT CGGTGGTGAC
GGCTGGGCCT ATGACATCGG CTATGGCGGC GTCGACCATG TGCTAGCCAG CGGTCGTGAC
GTTAACATCT TAGTGATGGA CACTGAGGTT TACTCCAATA CAGGTGGCCA ATCATCCAAG
GCAACCCCAA TCGGAGCGGT CGCTAAGTTT GCGGCCGGAG GTAAGGCGGT GCCGAAGAAA
GATCTGGCGC TGCAGGCCAT CGCCTACGGA AACGTCTACG TGGCACGTAT CGCCCTTGGC
GCCAGCCCAC AACAGACCCT GCAAGCCTTC CGTGAAGCCG AAGCCTATAA CGGCCCGTCA
CTCATTATTG CCTACAGCCA CTGTATCGAA CACGGGATCA ATATGATCGA TGGCATGCAG
CAGCAAAATC TGGCGGTAAA GGCCGGCTAC TGGCCCCTGT ATCGTTACAA TCCGACGCTG
AGAAGTGCAG GACGTAACCC CTTTATGCTC GACTCACTAC GCCCCACGTT GAAACTTGAG
GATTACGCCT ATAATGAAAA CAGATACCTT AGCCTGTTAA AGTCCGATCC GGATGAGGCC
GCGCGCCTTA TCAATCTGGC ACGCCAGGTG GTAAACCAGA AATGGGCGCT GTATGAGGAG
ATGGCGACGC GAAATGCCCA TAAGTTTACC CCTCATACCC GTAGTCGAAC CTGA
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| Protein sequence | MAKQVTIDGG EATAFVAYRT NEVCAIYPIT PSSTMAELAD QWASQNIENI WQQVPLVAEM
QSEGGAAGTV HGALQTGALT TTFTASQGLM LMIPNMFKIA GELTPTVFHV AARALSTQGL
SIFGDHQDVM AVRMTGFAQL VSSSVQECHD MALVSQAVTL NCRVPFIHFF DGFRTSHEVS
KIDLLEDEQI KTMIDDEMVF AHRSRALNPD NPFMRGSAQN PDTYFQSRES ASRYYNDAVE
AVDVALDRFY QVTGRRYHSF EYYGDKDAER VIVIMGSGSE TAITTAQHLN AQDHVTQKSR
VGVLRVRLYR PFSCEHLLKA LPQSVTSVAV LDRTKEPGSD GEPLYKDVSN ALYQAVSRGD
RKTMPVVIGG RYGLASKEFT PAMVARVYQE LTTKAPKNDF TIGIIDDVCH SSLEVKESLD
IESDKLVQAM FYGLGSDGTV SANKNSIKII GGVEGYYAQG YFVYDSKKAG SQTVSHLRFG
PEPIRAPYLI QSANFIACHQ FSFIKHVEML ERAKQGATFL LNSHYDADQI WDQLPAHVQQ
ELLDKQIKFY VIDGAKVARS VGMGKRINTV MQTCFFALSG VMPKEQAIER IKQAAEKTYA
KKGEEVVKRN FAAIEQALAH LQRVNLPRKV SNTSGREADG LFDRASGFVK EVTAEMFHGR
GDRIPVSMLP DDGTYPTGTS QYEKRSIASE IPIWDREICI QCGNCAIVCP HAAIRAKFYN
KRRLQGAPTT FPSSNVTSRG FPDARYTLQV YADDCTGCGL CVKACPVNHT ADEHHHAINM
QNKEKHLQDE RRNLEFFETI AYNRRTRVDF SNVRGVQFLQ PLFEFSGACS GCGETPYLKL
LSQLFGDRML VANATGCSSI YGGNLPTTPW AKNSENKGPA WANSLFEDNA EFGYGYRLTA
DKHLELAQSR LLALKERLDP ELVEQTVNAP QSHESEIHEQ QERVKDLTEQ LQTLDDPRAK
ELLSVIDHLV RRSIWIVGGD GWAYDIGYGG VDHVLASGRD VNILVMDTEV YSNTGGQSSK
ATPIGAVAKF AAGGKAVPKK DLALQAIAYG NVYVARIALG ASPQQTLQAF REAEAYNGPS
LIIAYSHCIE HGINMIDGMQ QQNLAVKAGY WPLYRYNPTL RSAGRNPFML DSLRPTLKLE
DYAYNENRYL SLLKSDPDEA ARLINLARQV VNQKWALYEE MATRNAHKFT PHTRSRT
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