| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2272 |
|---|
| Symbol | |
|---|
| ID | 5611652 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 2744788 |
|---|
| End bp | 2745567 |
|---|
| Gene Length | 780 bp |
|---|
| Protein Length | 259 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640933182 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001474009 |
|---|
| Protein GI | 157375409 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1073] Hydrolases of the alpha/beta superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAGTA CAATGCTGAG TATGTTGGTC ACTCTACTCC TGATCTATCT GAGTGTCTGT
CTAGTGGTGT TTTTGCTGCA ACGTAAACTC CTGTATTTCC CCACGCCGCC ACTGCTGCAC
TTTTCGCCAC CAATGGAGGC GACTAAGGTA AGCTTTGAAA ATGGTGGCGA GCGCCTCAGT
GGCTGGGTGG TCAATGAAGG CCGCGCTAAG GCACTGCTTT ACTATGGAGG CAACGCCGAG
AATATCGAGT ACAACATCAC TTTTTTCAAG GATAACTTGC CGGACTATAC CATCTATCTG
ATAGCCTACC GGGGCTACGG CGACAGCACC GGAGAGCCGA CGGAGGCGCA CCTATACAGT
GATGCCCTGC ATATTTTTGA CCAGGTAACC GCTGAACATT CACAGCTGTC CTTACTGGGC
CGAAGCCTCG GCTCAGGTGT CGCCACCTAT GTGGCTACCC ATAGGGAGGT CGATAAGCTT
GTTCTGGTGA CGCCGTTCGA CAGTACAGCT AATGTCGCTA GATCCGTCTA TTGGATGTTT
CCGGTATCCC TGCTGATCAC CGACAAATAT GAATCGGCTA AACGAGCGCC GAATATTGTT
GCCAAAACGA CCATCATCTA CGCCGAAAAT GACAATGTGA TCCCTAGAGA GAGCACAGAA
CGCTTGATTG AGGCGTTCTC ACACAGGCTT GAAAATAGCA TCTTAATCAG AAGCGCCGAT
CATAACGATA TCTCGGAATT CCCTGAATAT GCAGTAAGGC TTAAAAGAGC ACTGAATTGA
|
|---|
| Protein sequence | MKSTMLSMLV TLLLIYLSVC LVVFLLQRKL LYFPTPPLLH FSPPMEATKV SFENGGERLS
GWVVNEGRAK ALLYYGGNAE NIEYNITFFK DNLPDYTIYL IAYRGYGDST GEPTEAHLYS
DALHIFDQVT AEHSQLSLLG RSLGSGVATY VATHREVDKL VLVTPFDSTA NVARSVYWMF
PVSLLITDKY ESAKRAPNIV AKTTIIYAEN DNVIPRESTE RLIEAFSHRL ENSILIRSAD
HNDISEFPEY AVRLKRALN
|
|---|
| |