| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2268 |
|---|
| Symbol | |
|---|
| ID | 5611777 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 2741100 |
|---|
| End bp | 2742089 |
|---|
| Gene Length | 990 bp |
|---|
| Protein Length | 329 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640933178 |
|---|
| Product | ADP-ribosylation/crystallin J1 |
|---|
| Protein accession | YP_001474005 |
|---|
| Protein GI | 157375405 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG1397] ADP-ribosylglycohydrolase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.415258 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAATCAGA AATCTATCTC ATTAGTTGAA CGTGCAAAAG GTGCATTGCT TGGTCTTGCC
TTAGGCGATG CCTTGGGTAC GACATTGGAG TTCAGACCAA AAGATTCTTA TCAACACCTT
ACCGATATGA TTGGTGGCGG CCCCTTTAGA CTAAAACCGG GTCAGTGGAC CGATGATACT
GCCATGATGC TCTGTCTCGC AGATAGTTTT ATTCACACTG GCAAGAATGA TATTCAGGAT
CAGGTGGCGC GGTATTGGTC CTGGTACCAG GATGGTCTTA ACTCATGTAC GGCTGAGTGC
TTCGATATCG GTAATACAGT AAAAAATGCA TTAATCTCGT ATCAGAATGA TGGTAATGCC
ATGGCTGGCA GCAGATCACA ATACAGCGCC GGAAATGGTA GCTTAATGCG AATTGCGCCA
GTTGCACTCA TGTATCACAG TGCCTCTATA ACCGATGCGA TGACCGCAGC ATGGTTTAGT
GGTGCTACAA CACACGGCGA ACCCAGATGT ATTCAAGCTT GCCAGCTAAT GACATTTTAT
ATTCACAAGC TTCTCAATAG CGAAAGCCAA CCTCCTAAAG ATGAACTTTT TGAATTGCCA
TTTTTTCTGC TTGACACGAT TTCAAGTGAA TGGTCAGAAG AGATTAAATA TATTGCCCTG
GGTGAATACA AGAACAAATC ACGTCAACAA ATTAAAGGCA CGGGTTTCGT CGTAGAGTCA
CTTGAGGCTG CGCTTTGGTG CTTTTATCAG ACTAATGACT TCGAGTCGGG CGCATTACTT
GCCGCAAATT TAGGTGACGA TGCTGACACC ACCGCCGCGA TTTACGGTCA ACTGGCAGGT
GCCTATTATG GTTTATCAGG GTTGCCGGCT AACTGGCTGA ACAAATTGGC CTGGAAAGAG
ACAATAGAAG AGAAAGCTGC ACTGCTAATC ACAACCCCTA TGTTGGCCCA TGAGTATACG
AACTTTAGTT TACTAAAACA TGAGATCTGA
|
|---|
| Protein sequence | MNQKSISLVE RAKGALLGLA LGDALGTTLE FRPKDSYQHL TDMIGGGPFR LKPGQWTDDT
AMMLCLADSF IHTGKNDIQD QVARYWSWYQ DGLNSCTAEC FDIGNTVKNA LISYQNDGNA
MAGSRSQYSA GNGSLMRIAP VALMYHSASI TDAMTAAWFS GATTHGEPRC IQACQLMTFY
IHKLLNSESQ PPKDELFELP FFLLDTISSE WSEEIKYIAL GEYKNKSRQQ IKGTGFVVES
LEAALWCFYQ TNDFESGALL AANLGDDADT TAAIYGQLAG AYYGLSGLPA NWLNKLAWKE
TIEEKAALLI TTPMLAHEYT NFSLLKHEI
|
|---|
| |