| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2263 |
|---|
| Symbol | |
|---|
| ID | 5611899 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 2734272 |
|---|
| End bp | 2735948 |
|---|
| Gene Length | 1677 bp |
|---|
| Protein Length | 558 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 640933173 |
|---|
| Product | AMP-dependent synthetase and ligase |
|---|
| Protein accession | YP_001474000 |
|---|
| Protein GI | 157375400 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.694237 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGGCTA TAATGACAAA TGATAAACCG TGGTTAAAAA AATATCCTGA GGATGTGCCC
ACAACAATAG ATTCAAGTAT GTATAATAAT ATCAATGACT TGTTCAAAGA GTCTTTTAGT
GCGCATGCTA AAAAAGCAGC ATATATTAAT ATGGGACATA GCTTATCCTA CCAAGATCTC
GAAAGTAAAA GTAACGCTTT TGCTGCTTAT CTACAATCTG AACTAAAAAT GAAAAAAGGC
GAACGAATCG CCTTGATGAT GCCTAATTTA TTGCAATATC CCATAACTAT TTTAGGTGCA
TTAAAAGCAG GACTCATTAT TGTCAATGTT AATCCACTTT ATACCCCTCG AGAGTTAAAA
CATCAATTAC GAGACTCAGG GTCCAGTGCT ATTGTTGCCG TAACAAATTT TGGTAACAAC
CTTCAGCAAA TACTGCATGA GACTAGCATT AAGCATGTTA TTTTAACCAA AATCGGCGAT
GAGTTAGCTA TTCATAAGCG TACATTGGTT AACTTTCTTA TCAAACATGT CAAAAAAATA
GTGCCTAAAT ACCATATTCC CGACGCTATT TCATTGCGTA GAGCGTTAAC CGAAGGCAAG
AAACTTCCCT TTATTGATCC CCAAATAACA GTAGATGATT TAGCATACCT CCAATATACA
GGTGGAACGA CTGGTCCTGC GAAAGGGGCA ATGCTTACTC ATAGTAATAT TATTTCTAAC
GTTCTACAGG TTCATGCGCA TTTTAGCCCA AGAACCTTAT ATGATAAGGA ATATGCAGTA
ACCCCACTTC CGCTTTATCA TATTTTTGCC AATTCAGTGA GTATGATGTT TATGCTCTTT
CTCGGTGCAA CGAATTTACT CATTACCAAC CCAAGAGATA TCGATGGTTT CGTAGCAGAT
TTAAGTAAAT ATCCATTCAC AATGGTTTTT GGTTTAAATA CACTTTTTAA TGGTCTAAAC
AATCATGCTG GTTTTCAAGA ATTAGATTTT AGTCACGCTC GTTTTACTAT TGCAGGTGGA
ATGCCGACGC AGAAAAATAT TGCTGATCGT TGGCAAGAGC TCACTGGAAT GCCTGTCATA
GAAGGTTATG GCTTAACTGA ATGTTCCCCT GTGGTCGCTG CAGGTACTCA TCAACAACAG
TCATTTATCT CTTCAATTGG TGTCCCTTTA CCCAGCACTG AACTCCGTAT CGTTAATGAT
GAAAATGAAC CTTTAGCCCC CAACCAAATT GGTGAAATTC AAATTAGAGG GCCCCAAGTG
ATGAAAGGCT ATTGGCAACA AGAAGCCGAA ACCAATACTG TAATGCATGC AGGAGGTTGG
TTAAGCTCTG GCGATATAGG AAGAATGGAT GACGATGGGA TTTTTTATAT TGAAGACCGT
AAAAAAGATA TGATTCTAGT GTCGGGATTT AATGTTTTTC CAACTGAAAT TGAAGAAGTT
GCAACACTTC ACCCTCACAT CATCGAAGCT GCGGCCATTG GCATTCCTGA TGACGCCACA
GGAGAAAAAG TTAAATTATT TATTGTACGC AAAGGTCATG TGACCGTTGA TGAAATAAAA
AAACATTGTA GAAAATATCT TACCGGTTAT AAAAACCCAA GGATAATCGA ATTTAGAGAT
GAATTGCCAA AATCAAATGT TGGGAAGATC TTACGTCGAG AATTACGAGA TTCATAA
|
|---|
| Protein sequence | MMAIMTNDKP WLKKYPEDVP TTIDSSMYNN INDLFKESFS AHAKKAAYIN MGHSLSYQDL
ESKSNAFAAY LQSELKMKKG ERIALMMPNL LQYPITILGA LKAGLIIVNV NPLYTPRELK
HQLRDSGSSA IVAVTNFGNN LQQILHETSI KHVILTKIGD ELAIHKRTLV NFLIKHVKKI
VPKYHIPDAI SLRRALTEGK KLPFIDPQIT VDDLAYLQYT GGTTGPAKGA MLTHSNIISN
VLQVHAHFSP RTLYDKEYAV TPLPLYHIFA NSVSMMFMLF LGATNLLITN PRDIDGFVAD
LSKYPFTMVF GLNTLFNGLN NHAGFQELDF SHARFTIAGG MPTQKNIADR WQELTGMPVI
EGYGLTECSP VVAAGTHQQQ SFISSIGVPL PSTELRIVND ENEPLAPNQI GEIQIRGPQV
MKGYWQQEAE TNTVMHAGGW LSSGDIGRMD DDGIFYIEDR KKDMILVSGF NVFPTEIEEV
ATLHPHIIEA AAIGIPDDAT GEKVKLFIVR KGHVTVDEIK KHCRKYLTGY KNPRIIEFRD
ELPKSNVGKI LRRELRDS
|
|---|
| |