| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2255 |
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| Symbol | |
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| ID | 5611895 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2719824 |
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| End bp | 2722886 |
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| Gene Length | 3063 bp |
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| Protein Length | 1020 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640933165 |
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| Product | UvrD/REP helicase |
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| Protein accession | YP_001473992 |
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| Protein GI | 157375392 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGTCTCGAC TCAGTACTAC AAAGCCAATA ATAGCATCTC AATCGTTAAC TATTGCACAA
CCAAATGTTG GACCATCATC AGGTACTCCA TCGGATATTT TGTCTGGTAC ATCGTCTGAT
TCTTTATCTG ATTTATCATC TGGCACACCT CCGGCAGGGG AGCCTTTCTC CTCCTTAGTT
GAAGTAGGAG CTTCGAGTGA AGAACAAGCC GTTAAGCAGA TTCCTTATAG TTGGTTTGGC
CAATTCTTTA AGCAGTCAGA GTTTGCAGTC AGGTTTGATG CTAGTGGGCT TACTCTCACT
ACATTGCATC AGAATCGATT CTTTACGGCT GAACGTTTTA ATAAGAGTGA AAATAGCAGT
ACCGATCGCC ATTCACTTGA AAAAAACGTA GAAAATAACG ATGACGATGA TAAGGGTGCT
GCGCTTCATT TTAACTGGCA GCAGCTGGAT AAACCTGCGG TGTTTAATTG GAGTTTCTTC
GGCTACCTGA TGAGCTTTTC AACAAATGAG CAGATCTACA GTACCCCATT TTTGTCCTAC
GGCTCAAAGT CACAGTTTGG TGAAGATATA GCCCTGCTCT GGGCTGAGGC TAATCAAGAA
AGATTATGTA AACTGGTCAG CAGAATAGAA GATGCGATAT CCGGCGAGTA TCTGCGTCAA
TCACGCCTTA AGAGCATCTC AGCCCGTGTC GCGCGAGAAT ATGCACGTTG GTTTCCCTGG
TCAAAGAATC CTTCTCTTAA TCTGGACGAA GAGACCCAAA CTGCTTTATC TAAGCTGCAG
CAGTTTAAAG GCTGGACAGA CCGAGATATT GACAATATCC GTGAGCTGTA CGTTCAGCAG
CAGTTGCTTC GGCACAAGGC GTTTTTCGAT AATGTAGAGT CTAATCCATT AACTGAGAAA
CAGCGCCGGG CCTGTGTTAT CGATGATAAT AACAATCTCT TGTTGGCCGG AGCCGGTACG
GGAAAGACCA GTGTTATGGT TGGCCGGGCA GGGTATTTGA TTGAAAGCGG ACAGGCTATC
GCCGATGATA TTTTACTGCT CGCTTATGGA AAGGTTGCCG CCAAAGAGAT GGAAGAGCGT
ATCAAGCTCA AGCTAGGTCC GCTATTAGGC TCTCCTGAAA AAAACCAGGG ACAGATGGGC
GTTGGTAATG ATATCAGGGT AAGCACCTTT CATAGTTTGG GCCTGCGAAT TATCACCGAG
GTCGAAGGGA CAACACCTAA GTTGTCTCCC TGGATTAATG ACGAGAAAGG CAAAGAGAGT
TGGCTTAATG ACGCGCTCGA GTCGTTAATT AAAGAGAAGC GTTATCGTAA GCGATTTCTG
GCGTTCTTCG GTGAACATTT TCAGGTAGAG ATGAGTCCCT TTGATTTCGA GAGTGAAAAA
GACTGTATAG ACTATTTCAG TGCTAACGAT ATTCGAACTT TCAAGGGCGA TAAGGTAAAG
AGTTTTGGTG AATTGCAGAT AGCCAACTGG CTGTATAAGC AAGGTATTGA GTACCGTTAT
GAAGCCAGCT ACCAACACAA GGTTACTGAT AAGAAAGCGC GTCAATACAA GAGTGATTTC
TATCTGCCTC AATATGATCT TTATATCGAT TACTTCGAAA TCGATGAAAC AGGTGCCGCG
CCTGCCTTTA TCGATAATGA CTCATATCAG GCTTCGATAG AGTGGAGACG CGAGCTTCAT
AGTCAAAATA ACACTCACTA TGTCGACTTG TATCACCACC AGCACAATCA GGGACAGATG
CTTAAGGTAC TTTCCAAGGC CCTAACCAAA TATCGGGTTA AACGCGCTCC TATGGATGAT
GAAACACTGT TAGCCCAGCT ACGTCACTCT GGCGATATCA CCAAACTGGT AAAGTTATTC
AGTCAGGTAC TGACGCTGTA TCGGGGGGCG TGTCTGGATG ATAAGTCTCT GGCCGGGCTC
CTGTCTGAGT CGGCAGAACA GAAACAAACG CAAGCCGCAT TTACATTATT AAAGCCCATC
TTGAAGTCAT ATCGTGACCA TTTAAATAAC AGTGGTGAGA TAGATTTTGA AGAGATGATA
GCGAAAGCGA TTCAGTATAT TGAACAGGGC CGGTTTGTCT CTCCCTGGCG CTTTATCATG
GTGGATGAGT TTCAGGATAT CTCTGAACCA AGGGCTCGAC TGATAAGGGC GCTGCGAGAT
TCAACTTGTC GAGTCTCAAA AGAGAAACCT GCAGAAGAGG CAAAATCGGC CGCGGGCTCT
AAAGACAAAG CTAAAACCCG AGCTAAAGCT ACAAGCTCTG TAAAATCCGG GCGTTCAGCT
TCACTGTTTT GTGTCGGAGA TGACTGGCAG GCTATCTATC GTTTCAGTGG TGCCGATGTA
AAGCTAACCA CTGAGTTTGA ACACTATTTT GGCTCCGTCA CTAAGAGTCA TTTAGATCTT
ACATTTCGTT TTAACTCACG TATCGGTGAT GTCGCGTCCC GGTTTGTCAC GCAAAACCCT
ATGCAGCTTA AGAAGACAAT CAATTCGATC ACCAAAGGCA GTAGATCTGC GGTGTCGATT
GTTAAAGCAA GGGCTGCAAA CAAGCAGAGC GGTGATGTGA GTGATCAAGG CCATTTAAAT
CAAGGGCAGT TGAATCAAAG CCTGTTAAAA CAGAGTACGC TCACCGAGAC CTTAAATGCG
ATTACGCAAT TAGTGAACAA GGAGAAAGGC AAACCAGAAT TTAAGCAAAA AGCTAAGCCC
ACAGTTTATC TGCTGGCGAG GTATTGGTTT GTGTTACCCG ACCAACAGGA GTTAGCTTTA
CTCAATCAAG CCTGTCCTGG TATTAACATC GAGTGCCACT CTTTTCACGC CTCAAAGGGT
AAGGAGGCCG ACTATGTGAT TATTATGGGG CTGACTACCG GCGTTTATGG TTTCCCATCT
CTGAAGACAA CGCCTCCCGT ATTAGATGCT TTACTTCCTG AGGCGGAGGA CTTCAACTTC
GCCGAAGAGC GCCGTCTGTT TTATGTGGCG TTGACCCGTG CTCAGCATAA GGTGTACTTG
CTGGCCGACA GGAAAGGAGT TAGCCCGTTT GTCCATGAGA TCGCACAATT ATGTAGGAAC
TAG
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| Protein sequence | MSRLSTTKPI IASQSLTIAQ PNVGPSSGTP SDILSGTSSD SLSDLSSGTP PAGEPFSSLV
EVGASSEEQA VKQIPYSWFG QFFKQSEFAV RFDASGLTLT TLHQNRFFTA ERFNKSENSS
TDRHSLEKNV ENNDDDDKGA ALHFNWQQLD KPAVFNWSFF GYLMSFSTNE QIYSTPFLSY
GSKSQFGEDI ALLWAEANQE RLCKLVSRIE DAISGEYLRQ SRLKSISARV AREYARWFPW
SKNPSLNLDE ETQTALSKLQ QFKGWTDRDI DNIRELYVQQ QLLRHKAFFD NVESNPLTEK
QRRACVIDDN NNLLLAGAGT GKTSVMVGRA GYLIESGQAI ADDILLLAYG KVAAKEMEER
IKLKLGPLLG SPEKNQGQMG VGNDIRVSTF HSLGLRIITE VEGTTPKLSP WINDEKGKES
WLNDALESLI KEKRYRKRFL AFFGEHFQVE MSPFDFESEK DCIDYFSAND IRTFKGDKVK
SFGELQIANW LYKQGIEYRY EASYQHKVTD KKARQYKSDF YLPQYDLYID YFEIDETGAA
PAFIDNDSYQ ASIEWRRELH SQNNTHYVDL YHHQHNQGQM LKVLSKALTK YRVKRAPMDD
ETLLAQLRHS GDITKLVKLF SQVLTLYRGA CLDDKSLAGL LSESAEQKQT QAAFTLLKPI
LKSYRDHLNN SGEIDFEEMI AKAIQYIEQG RFVSPWRFIM VDEFQDISEP RARLIRALRD
STCRVSKEKP AEEAKSAAGS KDKAKTRAKA TSSVKSGRSA SLFCVGDDWQ AIYRFSGADV
KLTTEFEHYF GSVTKSHLDL TFRFNSRIGD VASRFVTQNP MQLKKTINSI TKGSRSAVSI
VKARAANKQS GDVSDQGHLN QGQLNQSLLK QSTLTETLNA ITQLVNKEKG KPEFKQKAKP
TVYLLARYWF VLPDQQELAL LNQACPGINI ECHSFHASKG KEADYVIIMG LTTGVYGFPS
LKTTPPVLDA LLPEAEDFNF AEERRLFYVA LTRAQHKVYL LADRKGVSPF VHEIAQLCRN
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