| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2247 |
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| Symbol | |
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| ID | 5612092 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2709554 |
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| End bp | 2710786 |
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| Gene Length | 1233 bp |
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| Protein Length | 410 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640933157 |
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| Product | putative aminotransferase |
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| Protein accession | YP_001473984 |
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| Protein GI | 157375384 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG4992] Ornithine/acetylornithine aminotransferase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0940385 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTCAGTC ATTTAACGAA AAAAAATACG CTGGAAATAG CCCATAAACA CCTTATTCCG
GCCAGGCTCG ATGCTTTCAG CAGTTTTGGG GTAGAGCTGG TCATAGGAAG GCGTGAAGGA
TATCGGATCT GGGATCTCGA TGGCCATGAA TTGATGGATC TGCATCTTAA TGGTGGCACA
TTTAATTTAG GGCATAGAAA CAAGGAGTTG TGTGATTTAC TCAAAGAAGG TCTGGACTAT
CTGGATATTG GTAATCACCA TTTCGCTAGC CCGGAGCGGG CAAAATTGGC CAAACGCCTG
TCGGAACTGA GTCCGGGTGA GCTTCAATAT ACCGTGTTTG CCAGTAGTGG TTCCGAGGCC
GTCGATATTG CGATTAAATC CGCGAGACAG GCGACCGGGA AACGAAAAAT CATCTCACTT
TCATCTGGAT ATCATGGCCG TACTGGCTTA TCAGGCGCTG CGGGTAACGA TGAGGCGGCT
CAGTTTTTTA ACAGTGCCTA TCCGGATGAA TTTATCACAG TACCTTTTAA CGACTTAGAT
GCGATGGCAA CGGCTTTGGC ATCGAATGAT ATCGCAGCAG TATTAATTGA AACCATTCCT
GCAACGCAAG GATTTTTAAG CCCGATAGAC AACTACCATC TTAAGGTTAA ACAACTATGC
GAGCGTCACG GTGCCTTGTA TGTTGCCGAT GAGGTACAAA CCGGCCTCGG TCGCAGTGGT
TGTTTATGGG CCATCGAGAA ATATAATGTT GAGCCGGACA TCATGGTGAT TGGAAAGGGG
TTATCGGGGG GGATCTACCC GATTGCCGCC GCCATGTTGA GCGCAAAAGT CGGCCAATGG
TTAACCGAAA GTGGTTGGGG ACACGTGTCA ACGTTTGGCG GCGCCGAACT TGGTTGTCTC
GTTGCAAACC GGGTGCTGGA GATCTGTAGT GACAGTTCTG TTATGGCCAT AGTCGATGCC
AATCAATCAT ACCTGCGTGA AAAATTGGAA TTACTGAAAG CGCAATACCC CTTGTTAAGT
GAAATACACC AATGCGGATT AGTGTTCGGT CTTAAATTTG ATCAGGACGA TGGTGGGATC
GAGATGATGC GTGCCCTGTA TAAACACGGT GTCTGGGCCA TTTTTGCAGG CTTCGACACC
AGTATATTGC AGTTCAAGCC AGGACTCCTG ATAGATAGAG CCTTCTGTGA TGAGTTAATG
ACTCGATTTG AAAAAGCCCT ACAAGAATTA TAA
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| Protein sequence | MLSHLTKKNT LEIAHKHLIP ARLDAFSSFG VELVIGRREG YRIWDLDGHE LMDLHLNGGT
FNLGHRNKEL CDLLKEGLDY LDIGNHHFAS PERAKLAKRL SELSPGELQY TVFASSGSEA
VDIAIKSARQ ATGKRKIISL SSGYHGRTGL SGAAGNDEAA QFFNSAYPDE FITVPFNDLD
AMATALASND IAAVLIETIP ATQGFLSPID NYHLKVKQLC ERHGALYVAD EVQTGLGRSG
CLWAIEKYNV EPDIMVIGKG LSGGIYPIAA AMLSAKVGQW LTESGWGHVS TFGGAELGCL
VANRVLEICS DSSVMAIVDA NQSYLREKLE LLKAQYPLLS EIHQCGLVFG LKFDQDDGGI
EMMRALYKHG VWAIFAGFDT SILQFKPGLL IDRAFCDELM TRFEKALQEL
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