| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2235 |
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| Symbol | |
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| ID | 5612390 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2694574 |
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| End bp | 2695917 |
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| Gene Length | 1344 bp |
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| Protein Length | 447 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640933145 |
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| Product | FAD dependent oxidoreductase |
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| Protein accession | YP_001473972 |
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| Protein GI | 157375372 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.622258 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCACCA ATACTAGCTA TGATCCTCTG GTTGACACGT CTCCGGCCAA CCTTAATTGG
CCCGATTCCT ATTGGGCCAG TACAGTCAAC AAACCGATAT CTAATTCACA TCTATCGGGA
CGTCTCCAAA CTGATGTTGC CATCATCGGA GCCGGATATA CCGGACTTAT TACGGCTTAT
TACCTTGCAA CGCGATTTAA TATTGATTGC TGTGTCTTAG AAGCAAACAC GGTAGGTTTT
GGTGCCAGCG GTCGCAATGC GGGGTTTGTA TTGAAAGGCT CCGGTCGGCT GGGATATGCA
CAGATGGCAA AGCGGTGGGA CCTCGCCACG GCAAAGGGGA TCTACCACGA ATTTAGCCAG
GCGGTAGATA GAGTCGGTGA GCTCATAAAT ACTCACCAGA TCGATTGCGA CCCTCAGGAG
AAAGGCTATC TCAAAATTGC GCACAATAGT CATGCCCTAA AGTCACTTCA AAGCGCTTCG
AGTTTTATTA CCGAGCATTT GGGAGGCGAG GCCGAGTTTA TATCGCAAAG CAGATTAACC
AGTGAATTTA TGGCACACCA TCAAGCCTAT GGCGCAATGA GGTTAAATGA TGGCTTTGGA
CTTAACCCGC TTAAGCTGGT GCTCGGCTAT AAGCGGATGG TGGAGAAGCA AAAGGTCAAT
ATATTCGAGA ACACCTGTGT TAAACACTGG TTCGAGGAAA AGGGTAAGCA TAGGTTAATC
ACGGAGCATG GTGAAATACT GGCAAACAAA GTCATTAGCG CGGGTAATGC ATACACGCCG
AAGGTGTTTA GTCCTAAACT GGATGAAAAA TTCCTGCCTA TACTGAGTAA TATTATTGTC
ACCGAGCCAC TCAGTCATGA AGAGCTACAG CTTGCTGGCC TTCATACCCG ACAGGTAACA
ATGGACACTC GCATACTCAA ATATTATTAC CGTCTGCTCC CTGATAATCG ATTGTTATTG
GGAGGGCGAG GGGCTATCTA TGGCAAAGAT GCCATGAATC CAGTATACGC CCAGCGATTA
CGTTATGCTT TGGGTCAGTG TTTTCCATCA CTAGCAAATA AATCTATATC TCATAACTGG
ACAGGCTGGA TAGCTGCGGC AATGGACGAT ATGCCCCATG TTTATGCGCG GGGAGGGACC
GGGTACAGTT TAGGTTATTG TGGTGCAGGA GTCTCTTTCA GTGCACAAGC AGGCTTCAGG
TTGGCTCAAT CTATTGCGGG GGAGGAGATA CCATCTCTCC CCCTATATAC TAACCCCTTA
CCCCATTTCC CAATGCCAAG GTTACGTCGA CTGGGTCAAT GGGGCTATTA TCACTACGGT
TGGTTGAAAG ATCGCTATTT ATAA
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| Protein sequence | MTTNTSYDPL VDTSPANLNW PDSYWASTVN KPISNSHLSG RLQTDVAIIG AGYTGLITAY
YLATRFNIDC CVLEANTVGF GASGRNAGFV LKGSGRLGYA QMAKRWDLAT AKGIYHEFSQ
AVDRVGELIN THQIDCDPQE KGYLKIAHNS HALKSLQSAS SFITEHLGGE AEFISQSRLT
SEFMAHHQAY GAMRLNDGFG LNPLKLVLGY KRMVEKQKVN IFENTCVKHW FEEKGKHRLI
TEHGEILANK VISAGNAYTP KVFSPKLDEK FLPILSNIIV TEPLSHEELQ LAGLHTRQVT
MDTRILKYYY RLLPDNRLLL GGRGAIYGKD AMNPVYAQRL RYALGQCFPS LANKSISHNW
TGWIAAAMDD MPHVYARGGT GYSLGYCGAG VSFSAQAGFR LAQSIAGEEI PSLPLYTNPL
PHFPMPRLRR LGQWGYYHYG WLKDRYL
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