| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2229 |
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| Symbol | |
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| ID | 5612592 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2689445 |
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| End bp | 2690848 |
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| Gene Length | 1404 bp |
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| Protein Length | 467 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 640933139 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_001473966 |
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| Protein GI | 157375366 |
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| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain
[COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.161557 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCATCA ACATGTGCCG TTTTATTTTT ATTTTAATCC TTATGAATAT TGCTCAAACC
AATGCCAACG AGTTCAATCG AACGCCTGAG GCTTGGTCAA TGGAGGGCGG TCCCCTAATT
GTTGCAAACT CAAAAGCGTG GAAGCCATTT TCCTATATTG ATGACTCCGG AGAGCCACAA
GGATTACTGG TTGATATTTG GAAAGAGTAC GCAAGAGTAA ATAATATTAA AATAATATTT
CTGCTAACGG ATTGGAATGA ATCGGTTCAA CTCGTTCGCA GTGGTAAGGC AGATGTACAT
GCTGGTTTGC TGTGGTCAGA TACCAGAGAG TCATTTTTTG ACTACCTTGA CGGAGTCGTT
GAAATTGAGA CGCAACTGTT TTTCTCGGCG GACTACCTTG GAACCGATGT CGCTCAGTTT
CTTCAATCGG GTGAACTTGG TGTCGTGATG GGTGGATACG AAGAAAGTTA TATAAGAGAG
AAATATCCAA ATGTTAAGTT AATCTCATAT ACAAATAATG AAGTCATGTT GAACAGTGCC
TTTTCTGGCG AGCTCAATGC GTTTGTAGCC GATTTCCAAG TGGCAAACTT CTATCTGTAT
ACTTCATCTG AACCAAGCTC ATTTTCACCC GTTAAGCATC TCTACAGTGC CCAAATTAGA
CCTGCAGTGA AGGAGGGGGC CCATAGGCTC AGAATTGAAT TAGAGACAGG TATGAGCAAT
ATCTCTAAGG TCGATCTGCA GCGAATCCAG CGTAAATGGC TTCATGTTGA AACGGTTTAC
CCAAAGTACC TATTTCAATT CGTATTTTCG TTATTGTTAG GTTTTTCTTT GCTCTATATC
CTTCAATTAC GCAAGACCGT TTCATCGCGG ACGGCAGAGC TAAGGCAACT TAATCTCGAG
TTACAACACC TGGCTTCAAT AGATTCACTC ACAGGCATCT ATAACAGACG ATATTTCATA
AGAAGCTTGA AAGATGCGTG CCGGACAATG AATGAAGAGG CCAGCCTCAC TCTGCTCCTA
TTCGATATCG ATAAGTTTAA AACAATTAAC GACAATTTTG GCCATGTGGT TGGCGACTAT
ATCATTAAGC AAATTGCCCA AGTTGTGGCC GAGGAAATTC CAAGCGATGC CGTCTTTGCC
AGAATTGGAG GAGAGGAGTT CTGTATTTAT CTTCACAACT TGACGGTTAA ACAAGCCAAT
ACTTTATCAA AAAAAGTTCA AGCTTGTGTA TCTGCAGCTC AATTTGAAAA AGATCAGGTT
TGTCATCATG TCAGTGTGAG TTTAGGTAGC GTGTATTGCA CGACTGCAAT GGTGGACCAT
CAATACCTAA TAAACCAAGC CGATCATTTG ATGTATATTG CTAAGTCTTT AGGAAGGGAT
GGTTATCAAT TTAAGACATT ATAA
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| Protein sequence | MTINMCRFIF ILILMNIAQT NANEFNRTPE AWSMEGGPLI VANSKAWKPF SYIDDSGEPQ
GLLVDIWKEY ARVNNIKIIF LLTDWNESVQ LVRSGKADVH AGLLWSDTRE SFFDYLDGVV
EIETQLFFSA DYLGTDVAQF LQSGELGVVM GGYEESYIRE KYPNVKLISY TNNEVMLNSA
FSGELNAFVA DFQVANFYLY TSSEPSSFSP VKHLYSAQIR PAVKEGAHRL RIELETGMSN
ISKVDLQRIQ RKWLHVETVY PKYLFQFVFS LLLGFSLLYI LQLRKTVSSR TAELRQLNLE
LQHLASIDSL TGIYNRRYFI RSLKDACRTM NEEASLTLLL FDIDKFKTIN DNFGHVVGDY
IIKQIAQVVA EEIPSDAVFA RIGGEEFCIY LHNLTVKQAN TLSKKVQACV SAAQFEKDQV
CHHVSVSLGS VYCTTAMVDH QYLINQADHL MYIAKSLGRD GYQFKTL
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