| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2224 |
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| Symbol | |
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| ID | 5612633 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2681062 |
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| End bp | 2681961 |
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| Gene Length | 900 bp |
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| Protein Length | 299 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640933128 |
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| Product | protein of unknown function UPF0052 and CofD |
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| Protein accession | YP_001473961 |
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| Protein GI | 157375361 |
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| COG category | [S] Function unknown |
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| COG ID | [COG0391] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR01826] conserved hypothetical protein, cofD-related |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCATAAAA GCGCGTTAAA TCAATATGAG CATGTAGTCG CTATCGGCGG GGGACACGGT
CTGGGACGAG TGCTGTCTTC ACTGTCATTT TTGGGACCTA GGCTAACCGG TGTGGTGGCA
ACCACTGATA ATGGTGGCTC TACGGGGCGG CTCAGACAAG AACAAGACTG CATCGCCTGG
GGAGACCTGA GAAATTGCCT TTCTCAACTC GCCAACCACC CTTCTATCGG TACACTATTA
TTCGAATATC GTTTCGATGG GGAAAGTGAC CTGTCCGGCC ATAACTTGGG TAACCTTATT
CTCCTCGCCT TAGATCAGTT ATGCGTCAGA CCGTTAGAAG CCGTCAACCT TATCCGGCAA
TTACTCAAGA TCGAAACCCG AGTGATCCCT ATGTCGGAAG AGCCTACTCA TCTGGTTGCG
ATAGAGGCTT GCGGGAATAA AATTTTTGGT GAGACCAATG TTGATAACAT GGATGAACAT
CCAATGGCCT TATCATTGGA GCCCATGGTT ACCGCAACAT GTGAAGCATG TGAAGCGGTC
TCGAAGGCCG ATCTGGTGAT ACTCGGGCCA GGCAGCTTTT TGACCAGTAT TATGCCACCC
TTGTTACTGC CTAAATTTGC ATCGGCACTT TCTAATTCGA ATGCCGAAGT GATTTTAATC
GATAATTTGA CTCGTGAACC CTCTCCCTCT GCAGATTTCT CTTTAGAACA GCGAATCGAT
TGGTGTCATC AGGTGTTGGG GATAAAGGTG ATTGATAAGG TGCTTTGTCA CTCAGAGCGA
AGCTATCAGG ATGGGAAGAT ATCTTACCGT CCGCTAGTTA GCAAGCATCA CCCTGGCCTC
CATGATAGAA CAGCTCTAGT GGATGCAATT TCAAGCATGC TGGCAGCTTC CCCTAAGTAA
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| Protein sequence | MHKSALNQYE HVVAIGGGHG LGRVLSSLSF LGPRLTGVVA TTDNGGSTGR LRQEQDCIAW
GDLRNCLSQL ANHPSIGTLL FEYRFDGESD LSGHNLGNLI LLALDQLCVR PLEAVNLIRQ
LLKIETRVIP MSEEPTHLVA IEACGNKIFG ETNVDNMDEH PMALSLEPMV TATCEACEAV
SKADLVILGP GSFLTSIMPP LLLPKFASAL SNSNAEVILI DNLTREPSPS ADFSLEQRID
WCHQVLGIKV IDKVLCHSER SYQDGKISYR PLVSKHHPGL HDRTALVDAI SSMLAASPK
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