| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2216 |
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| Symbol | |
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| ID | 5612873 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2673026 |
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| End bp | 2675404 |
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| Gene Length | 2379 bp |
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| Protein Length | 792 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640933120 |
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| Product | heavy metal translocating P-type ATPase |
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| Protein accession | YP_001473953 |
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| Protein GI | 157375353 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG2217] Cation transport ATPase |
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| TIGRFAM ID | [TIGR01494] ATPase, P-type (transporting), HAD superfamily, subfamily IC
[TIGR01511] copper-(or silver)-translocating P-type ATPase
[TIGR01525] heavy metal translocating P-type ATPase |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGTACC CTGAATGTTT TCATTGCGGT GAGCCCGTAT TAACAGGCTC TCAATTCACG
ACCCACATTA ATAATAGTGA TCGTTTAATG TGTTGCCCTG GCTGTCAGGC CGTTTCTGCC
GCTATTTTAG AGGCTGGACT CAGTAACTAT TATAAGTACA GAACCGAGCC CGGCAGTAAA
CAGACGGCAC TGGTCCCCGA AGAGTTAACC GCTTATTCAG CATTCGATCT CCCAGAGGTT
CAGCAAGACT TTGTACACAG TGAAAGCGAT ATCTCAAGGG TATCGCTCTC TATCGATGGC
ATTACTTGTG CGGCGTGTGC CTGGCTTATT GAACATAAAC TCAGGCATGT TGCGGGGATC
GCAAGTATTC AGGTGAATAC GACGACGGAA CGAGCCTTAG TCACCTGGTT GCCAACGCAG
ATAAAACTCA GTGAAATACT CAGCCAAATT AGCCTTATCG GTTATCAGGC GGCCCCTTAT
CAGGTCGATG AGCAGGAGAT CCAGAGTAAG CAGAACAGTC GACAATTTTT ATTGAGGCTG
GGTTTAGCGG GTTTTGCCAC CATGCAGGTG ATGATGTTTG CCCTCGCCCT CTATGCCGGC
TATTTCACTG AGCTCGAAGT TGAGTTTCGT GATTACTTTC GCTGGGTGAG TATGATATTC
GCCGCACCGG TGGTGTTCTA TTCGGCTCAA CCCTTCTATT TTAGTGCCAT CCGTTCCATG
TTCAGTGGAC GGCTCAATAT GGATGTATCG GTATCGATAG CCATCTTAGG GGCTTATATC
GCCAGCTGTA TTGCAACGGT TAACGCTACG GGCGAGGTTT ATTTTGAGTC GGTCAGTATG
TTTACCTTTT TCTTGTTACT CGGTCGATAC TTCGAGCAAA ATGCCCGACA GAAAGCGTCG
GTAAGCTCCA GTAATTTACA TAAGTTGGTG CCGCTTACGG CTCACCTGAT ATCAAATGAC
ACCTGCGAAG AGGTACCCGC TAAAGGATTG AAAGTGGGAG ACATCATACT GGTTAAACCT
GGAGAGGTTG TCGCCGCCGA TGGCACAATT ATCGAAGGTT GTTCCAGCTT CAATGAGGCC
ATGCTTACGG GTGAACAGAC ACCGGTACAG AAATCTGATA CCAGTGAGGT TTATGCAGGC
ACCATTAATG TTGAGCAGCC GATTAAACTT AAGATCACCG CAACGGGTCA AGATCAACTC
GTGGCGGAGA TCATTCGTCT GCAGGAGTCG GCTTCAAATA ACAAACCAAA AGTTGCCCTG
TATGTCGATA CTATCTCAAA TTATTTTACC TGGGCAATTC TCTCTATCGC GTTATTGACC
TACATCGTTT GGAAAATATA TTGGCCAGAA GATGCATTTT GGGTCACCTT AGCTGTGTTA
GTCGCCACCT GTCCTTGTGC ATTGGCGCTT GCTACACCTA CCGCCGTGAC GTGCGCAACG
GGGATCTTTA CCCGAATCGG TATCATTGCC CGTAAGCCTG GTGTATTCGA AAAACTCACG
AAAATAGATC ATGTTGTTTT CGATAAAACA GGTACCCTCA CCTGTGGCAC ACTCACGATC
ACAGATATCG AACTTTATGG TCAACTCGAT AAGGCACAAG TGCTTGAAGT CGCAGCAGCG
CTTGAAGCGA GCTCTCTACA CCCGATAGCC AAGGCCTTCG AGCCATACAA TAATCCACAA
CTTACAGTGA GCCGGATACA AAGTTTTGTA GGTCTTGGTT TAAGTGGTCA GATTAATAAC
ATTGATTACC GAATTGGTAG CGCCGAGTTT ATCGAGGTTA CCGGTGAACA TTCACAAGCC
GTCTATCTGG CTCAGGGTGA TGAGCTTCTC GCGAGGTTCA CCTTGGTTGA CGAAATAAGA
ACAGATGCTA AGGCGACGGT GCAGACGCTT ACACAGCAAG GCTGTAAAGT GTCTGTGGCC
AGTGGTGACG GTTCGATACA TGTCGATGAG GTTGCCGGAA GAATTGGCAT TACCGATGTT
TATAAAGGAT TAAAGCCCCA AGACAAGCTG AGTCTTATCC AAAACCTTCA AAAGAGCGCT
TCTGTTGCCA TGTTTGGCGA TGGGATCAAT GATGCCCCCG TTCTGGCGGG AGCCAACCTC
TCTGTCGCGA TGGGCAGTGG CTCGGCAATC ACTAAAAATA GTGCCGATCT GATCTTACTT
GGCGATCACC TTTCACGTTT TAACGATGCG GTAACCGTTG CAAGGCTAGT CGATAAGATC
ATTAAGCAGA ATTTGTACTG GGCTCTCGGT TATAACCTGT TTATAATCCC GTTGGCCGTT
ACGGGCCATG TTGCACCTTA TATTGCTGCC TTAGGTATGT CTGCAAGTTC ACTTATCGTG
GTCGGTAATA GTCTTAGATT ATTAAGGGTT CGTTTATGA
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| Protein sequence | MKYPECFHCG EPVLTGSQFT THINNSDRLM CCPGCQAVSA AILEAGLSNY YKYRTEPGSK
QTALVPEELT AYSAFDLPEV QQDFVHSESD ISRVSLSIDG ITCAACAWLI EHKLRHVAGI
ASIQVNTTTE RALVTWLPTQ IKLSEILSQI SLIGYQAAPY QVDEQEIQSK QNSRQFLLRL
GLAGFATMQV MMFALALYAG YFTELEVEFR DYFRWVSMIF AAPVVFYSAQ PFYFSAIRSM
FSGRLNMDVS VSIAILGAYI ASCIATVNAT GEVYFESVSM FTFFLLLGRY FEQNARQKAS
VSSSNLHKLV PLTAHLISND TCEEVPAKGL KVGDIILVKP GEVVAADGTI IEGCSSFNEA
MLTGEQTPVQ KSDTSEVYAG TINVEQPIKL KITATGQDQL VAEIIRLQES ASNNKPKVAL
YVDTISNYFT WAILSIALLT YIVWKIYWPE DAFWVTLAVL VATCPCALAL ATPTAVTCAT
GIFTRIGIIA RKPGVFEKLT KIDHVVFDKT GTLTCGTLTI TDIELYGQLD KAQVLEVAAA
LEASSLHPIA KAFEPYNNPQ LTVSRIQSFV GLGLSGQINN IDYRIGSAEF IEVTGEHSQA
VYLAQGDELL ARFTLVDEIR TDAKATVQTL TQQGCKVSVA SGDGSIHVDE VAGRIGITDV
YKGLKPQDKL SLIQNLQKSA SVAMFGDGIN DAPVLAGANL SVAMGSGSAI TKNSADLILL
GDHLSRFNDA VTVARLVDKI IKQNLYWALG YNLFIIPLAV TGHVAPYIAA LGMSASSLIV
VGNSLRLLRV RL
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