| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2212 |
|---|
| Symbol | |
|---|
| ID | 5613121 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 2670641 |
|---|
| End bp | 2671267 |
|---|
| Gene Length | 627 bp |
|---|
| Protein Length | 208 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640933116 |
|---|
| Product | cbb3-type cytochrome c oxidase subunit II |
|---|
| Protein accession | YP_001473949 |
|---|
| Protein GI | 157375349 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG2993] Cbb3-type cytochrome oxidase, cytochrome c subunit |
|---|
| TIGRFAM ID | [TIGR00781] cytochrome c oxidase, cbb3-type, subunit II |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.435246 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTTA ATCATGAGTT AGTCGAGAAA AACATCGGTT TAATGGGTAT TCTCACTGTT
ATCGCCATCA GTATTGGTGG TTTAGTGCAG ATCACTCCCC TGTTGTTTCA AAAAGACACT
ACCGAGCCTG TCGATGGATT AATTCCTTAC ACAGCTCTCC AGACTGAAGG TCGTGACATC
TATGTCCGTG AAGGTTGTTA TAACTGTCAC AGCCAGATGA TCCGCCCACT GCGTGCAGAG
ACTGAGCGTT ATGGTCACTA CTCTGTAGCT GGTGAGTCTG TATGGGATCA TCCATTCCAG
TGGGGTTCTA AGCGTACCGG TCCTGATTTG GCACGTGTAG GCGGTAGATA CAGCGATAAA
TGGCATGAAG TTCACTTGAT TGACCCACGC GCAGTGGTAC CTCAATCAAA TATGCCTGGT
TTCCCTTGGT TGGCAGAGAA CAAGCTTGAC GGCAAGTTAA CTGGCCAGAA GATGGATATC
CTTCGTAATC TTCATAAAGG TGGAAATAAA GGCCAAGACC TTTATACCGA TGAAGAGATT
GCGGGTGCAC AAAAAGCTGT CGAAGGTAAA ACTGAGATGC AAGCACTTAT CGCCTATCTG
CAGTCCCTTG GACATGCACT GAAATAA
|
|---|
| Protein sequence | MKFNHELVEK NIGLMGILTV IAISIGGLVQ ITPLLFQKDT TEPVDGLIPY TALQTEGRDI
YVREGCYNCH SQMIRPLRAE TERYGHYSVA GESVWDHPFQ WGSKRTGPDL ARVGGRYSDK
WHEVHLIDPR AVVPQSNMPG FPWLAENKLD GKLTGQKMDI LRNLHKGGNK GQDLYTDEEI
AGAQKAVEGK TEMQALIAYL QSLGHALK
|
|---|
| |