| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2182 |
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| Symbol | |
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| ID | 5613378 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2639520 |
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| End bp | 2640437 |
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| Gene Length | 918 bp |
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| Protein Length | 305 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640933086 |
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| Product | diguanylate cyclase with PAS/PAC sensor |
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| Protein accession | YP_001473919 |
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| Protein GI | 157375319 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.724323 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAATATGG ATAGTTCGTT AGACTCTGAT CTCATCACCT ATCTGTCAGG CAATAACCCT
ATGTTGCAAT GTCTGATAGA TACGCTACCT GTGCCTATTT TTTATAAGGA TAAAGTTGGG
ATCTATCTTG GGTGTAATCG TGCCTTCGAA GATTTTATCA AGATCGAGCG TAGTCAGCTT
ATCGGGAATA ATGTGTTTCA ACTCTTCGAC CGAGAACTGG CCGAGATCTA TCATAGTGCC
GATCAAGCCC TGTTCGATAA CCCCGGAATA CAGAATTATG AAGGTATGGT GCGTTCAACC
CAAGGGGATG AACGCTATGT AAAATTTCAT AAAACCAGCT TTGAAGATAA CAATAATGAG
GTTGCGGGTC TCATTGGGAT CATCTTCGAT ATTACGGCTC AGAAACAACT AGAAAGTAAG
CTGACTGAAC AGGCCACTTA TGACTCTCTC ACCGGTTTGT ACAATCGCCG GGAAGGACTC
AATCGGGTGG GGGAATTATA TGAGTTAACC CGGCGCAATA AGATGCCCTT AGCCGTATTA
ATGCTGGATG TGGATCATTT TAAACGAGTC AATGATCAAT ACGGCCATCA GGTAGGCGAC
CAGGCCCTTC ACTTTATTGC CAATACCTTG CGACAAACCA GCCGTAAGTC AGATGTTCTG
GTCCGTTATG GCGGCGAGGA GTTTCTTATA TTTCTCCCCA ACGTTGCCGA AGGTGATGCC
ATAACGTTCG CAGAGCGCTA TAGAACGGCG CTGGCCAAAA AAGCGATGAG GCTGAGTAAA
AGTCAGCGAC TACACCTGAC CGTGAGTATT GGTATCTCAT GTTACAGACA GCAAACATTA
ACCGACCTTA TTCATGAGGC GGATATAGCC CTCTATGAAG CTAAGAGTCG TGATAGGAAT
ACTGTCTGTA GTTATTGA
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| Protein sequence | MNMDSSLDSD LITYLSGNNP MLQCLIDTLP VPIFYKDKVG IYLGCNRAFE DFIKIERSQL
IGNNVFQLFD RELAEIYHSA DQALFDNPGI QNYEGMVRST QGDERYVKFH KTSFEDNNNE
VAGLIGIIFD ITAQKQLESK LTEQATYDSL TGLYNRREGL NRVGELYELT RRNKMPLAVL
MLDVDHFKRV NDQYGHQVGD QALHFIANTL RQTSRKSDVL VRYGGEEFLI FLPNVAEGDA
ITFAERYRTA LAKKAMRLSK SQRLHLTVSI GISCYRQQTL TDLIHEADIA LYEAKSRDRN
TVCSY
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