| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2176 |
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| Symbol | |
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| ID | 5613942 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2632686 |
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| End bp | 2633669 |
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| Gene Length | 984 bp |
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| Protein Length | 327 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640933080 |
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| Product | pyruvate dehydrogenase complex, E1 beta2 component |
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| Protein accession | YP_001473913 |
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| Protein GI | 157375313 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0022] Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.70271 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATGCTC AAACCTTAAC ATACAGAGAA GCATTACGTG CGGGAATAGA GCAGGCCCTG
GAAGATGATG AGCGCGTGTT CCTGATGGGG GAGGATGTGG GTCGCTACGG TGGCTGCTAT
GCGGTGAGCA AGGGGTTGTT TGATTACTAT GGCGAGCAGA GAATTATCGA TACACCTCTG
TGTGAATCCG GATTTGTAGG TGTTGGAATT GGTACCGCAC TTGGAGGGCT ACGGCCTATC
GTAGAGGTGA TGACGGTTAA TTTCAGCCTG TTGGCGATGG ATCAAATCGT TAATAGTGCA
GCCACATTAC GGCATATGTC GGGAGGTCAG TTTAATATCC CGGTAGTGAT CCGCATGGCC
TGCGGCGCAG GGCGTCAATT GGCCGCCCAA CACTCTCATA GCTGGGAGAA TTTTTACGCA
CATATTCCGG GGCTAAAAGT CTTGAGCCCT GGGACTCACA CCGATGCCAG GCATATGTTG
GGACAGGCAT TGAAAGATCC CGATCCCGTG ATTATCTTCG AGCATGTCAT GTTATTGAAT
GAGAGCGGAG AGGTCTCTGA AGCACCTGAA GCCGATATGG AAAGCGCCCT GGTACGTAGA
CAAGGAGAAG ATGTCACTCT TATCACCTAT GGGGGCTGCC TGCACAAGGC CCTGGCTGCG
GCAGATGAGC TTGCCAAGAT AAACATTAGT GCTGAGGTCG TGGATCTGCG CTGCCTGCGT
CCACTGGACA CGGATACATT CCTGGGCAGT GTTGAGAAGA CCCATCGTGC CATCATTATT
GACGAAGGCT GGAAAACCTG TGGTCTGGCC GGAGAGATCA GTGCCATCAT CATGGAGCAA
GGTTTCTGGA TGCTGGATGC CCCCGTTAAA CGAATCTGCA CGGCCGAAGT GCCGATCCCC
TATCCGAGCC ACCTGGAGCA GGCGGCGTTG CCTCAGGTAG AACAGATAGT AGAAATGGCT
CAAGCCATAA TGGATGGGCG CTGA
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| Protein sequence | MNAQTLTYRE ALRAGIEQAL EDDERVFLMG EDVGRYGGCY AVSKGLFDYY GEQRIIDTPL
CESGFVGVGI GTALGGLRPI VEVMTVNFSL LAMDQIVNSA ATLRHMSGGQ FNIPVVIRMA
CGAGRQLAAQ HSHSWENFYA HIPGLKVLSP GTHTDARHML GQALKDPDPV IIFEHVMLLN
ESGEVSEAPE ADMESALVRR QGEDVTLITY GGCLHKALAA ADELAKINIS AEVVDLRCLR
PLDTDTFLGS VEKTHRAIII DEGWKTCGLA GEISAIIMEQ GFWMLDAPVK RICTAEVPIP
YPSHLEQAAL PQVEQIVEMA QAIMDGR
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