| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2175 |
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| Symbol | |
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| ID | 5613941 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2631694 |
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| End bp | 2632689 |
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| Gene Length | 996 bp |
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| Protein Length | 331 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640933079 |
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| Product | pyruvate dehydrogenase (acetyl-transferring) |
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| Protein accession | YP_001473912 |
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| Protein GI | 157375312 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1071] Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit |
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| TIGRFAM ID | [TIGR03182] pyruvate dehydrogenase E1 component, alpha subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0863419 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAATCAAA AATTACGTAT AGATAGAGTA CATCTGATTA ATCAGTTAAG GCAGATGCTG
CGTATTCGTC GCTTCGAGGA GAAGTGTACA CAGCTCTATG CCGAGGAGAA GATACGTGGT
TTCTTACATC TGTACATAGG TGAAGAGGCC ATCGCGGTTG GGGTGATGTC GGTGTTGAAA
CCGGAAGATC AGATAGTGGC AACTTATAGA GAGCATGGTC ATGCACTGGC TCGCGGTTTA
TCGATGGGCA GTATATTGGC CGAGATGTTC GGTCGAATCA ACGGTTGCAG CAGGGGCCGT
GGGGGCTCGA TGCACCTGTT CGATAAGCAA ATGAATTTTT ATGGCGGTAA TGCCATCGTA
GCCGGCGGTT TACCCTTAGC CGCCGGGTTG GCCATGGCCA ATAAAAAGCA ACATAGAGAC
GCAGTGACTG TCTGTTTCTT CGGTGAGGGC GCCGTAGCCG AGGGAGAGTT TCATGAAGCG
ATGAACCTTG CCGTCTTATG GAAACTTCCC GTTTTGTTTG TGTGTGAAAA TAATGGTTAC
GCCATGGGGA CGGCCTTGTC TTTGTCTGAG TCTGAAACCA ACCTGGCCAG GAAGGCGTCC
GGTTATGGCA TGGCTTCCTC TCAAGTCGAT GGTATGAATG TCGTCGATGT TGAATCGGCA
ACGTCATCTG CGCTGGAGCT GATAAAGACA ACCTCTCAGC CCTATTTTCT GGAGTGTAAA
ACCTATCGCT TCCGCGGTCA CTCCAGTTTC GATGGACAAC TCTATCGTGA AAAAGAGGAG
ATCCGTCAGT GGGAGGAGAA GGGGCCTGTG ATCAGGTTGC AAAACTGGTT AAAAGAAAAT
AATCACTTCA ATGAAGAGGA GCTCGATGAG CTGGAGTCGG AGATAAAGGC CGAAATAGAG
GCCGCCATCG AATTTGCCGA AGGGGGCGCC TGGGAGGATA CCAGAGATCT CTGCAAAGAT
GTCTATAGCC CAACTCAAGA AGGAGAGCCG GGATGA
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| Protein sequence | MNQKLRIDRV HLINQLRQML RIRRFEEKCT QLYAEEKIRG FLHLYIGEEA IAVGVMSVLK
PEDQIVATYR EHGHALARGL SMGSILAEMF GRINGCSRGR GGSMHLFDKQ MNFYGGNAIV
AGGLPLAAGL AMANKKQHRD AVTVCFFGEG AVAEGEFHEA MNLAVLWKLP VLFVCENNGY
AMGTALSLSE SETNLARKAS GYGMASSQVD GMNVVDVESA TSSALELIKT TSQPYFLECK
TYRFRGHSSF DGQLYREKEE IRQWEEKGPV IRLQNWLKEN NHFNEEELDE LESEIKAEIE
AAIEFAEGGA WEDTRDLCKD VYSPTQEGEP G
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