Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2165 |
Symbol | |
ID | 5610006 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 2616832 |
End bp | 2618682 |
Gene Length | 1851 bp |
Protein Length | 616 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640933069 |
Product | TonB-dependent vitamin B12 receptor |
Protein accession | YP_001473902 |
Protein GI | 157375302 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG4206] Outer membrane cobalamin receptor protein |
TIGRFAM ID | [TIGR01779] TonB-dependent vitamin B12 receptor |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAGTTTTA AACTGCGACT CTCAGTACTA ACTATCGCGA TATGCCAGAC ATTTTCAGCC GCCGCTACAG CACCAGCCAA TCCCGTAGAT GATATTATTA CGGTAACGGG TGACAGATTT GACAACACTG CGGATCAGCA ACTCACCGTT ATCAATACCA TCGAGAGAGA GGAGATAGCC AGACTCAACC CTAAGTCTGT GGTTGATATG TTAGAAACCT TACCTGGCGT CAGTGTGACC CGCAATGGCG GCGCCGGACA ATCCGCTTCC ATTAGCATGC GTGGAACAAA CACCGATCAT GTATTGGTTC TCGTAGACGG TGTTCGTATC GGCTCGGCAA CCCTGGGCGC TGTGAGTTTC AACGCCCTCA CCCCTGAAAA TATTGAACGT ATCGAAGTCG TTAAAGGCCC AAGAGCCGCT GTTTGGGGCA GCGACGCCAT CGGTGGTGTT ATTCAGATTT TCACCCGTAA ATTAGAGGGC GGTGAATGGT ATGCCTCTGC CGAATATGGC AGTGATGACT ATATGCGCGC CAGTGCCGGT GCGGGCGTAA GCCACGGTGA CGGCCATACC AGCATCAGCA TCAATCGTGA AAAGAGCGAT GGATACGATA TTAAAAACGA TGCAGAAGAT GACAATGACG GTTACGACCG TTTGGGCGTG AGCGTTAACG GCCTGCAAAA CCTTAATCAG CAATGGCAGC TTACCTGGGC AGGTCAACTG GAGAGCGGTA ACTACGAGTA TGACAATATG GGTTATTACG GGCCCGGTGT TAATGAGGCC GACTACGATA ACTACCTGGT GAACATCGCG GCGCAATATC AAACAGAGAA GTTAACCAGC AAGTTGGCCC TTGGTCAATC ACGGGATAAG AATGAGAACT TTCGCGCAGA AGACCCGAGT TTAGGCGTCA ATTTATATGA AACGACCCGT GATCAGCTCA ACTGGAGTAA CCGATACACG GCAAACGATG ACCTGACCTT CATTGGCGGC GTCGACTGGT CGAAGGAATC TATCGAGGGT GACTATGCCG TCGACGAGCG CGATCTACTT GGCATCTATG GCCTGGCACG CTACCAAATT GGCAAACTCT TGATGGAAGG AGTTATTCGC TACGACGATG TTGAAAATAT CGATAGCGAA ACCTCATATA ACGCGAGTCT GGCCTATCAA TTCAATGACC AATGGCGTGT TACTGCCAGT TCAGGAACAG GCTTCAAGGC CCCAAGTTTC AATGACCTCT ATTGGCCAGA TTCAGGTAAT CCGGAGCTGG TATCTGAGAC ATCCGAAAAT CTGGATCTCA CCATCAGCTA TACCGGCGAT TACCTGCGTG GTTACTTGAG TATCTACCAA AACAAGATTG ATAACCTGAT CCAGTGGGCC CCTACAGGTG AGAAAGATGA TTATGGCTAC GATATCTGGA AACCGGACAA TATTGAAGAT GCCGAGATAA CCGGAGTAGA ACTCTCCCTT AACTACAGCA CCTGGGATAT TGAACATCAG CTGGGTTACA GCTACATCGA CGCGGTAGAT GGGGAAAGTG ACGAACAGTT AGTGGGCCGA AGCGAACATG AGTTTGATTA TGCGCTCAGC TATACCTGGT CTGAGTTCGA TCTGCTGGTT AACTATCACT ATCAGGGCGA GCGTAACGCC GGCGATTATG ACTATGACGG CGTGACTGAC TTCCTGGATG CCTACCATCA GGTCGACATG AGTATCGGTT ATAAGCTTGC CGAAGCATGG CAACTCAGGT TGAAGGCCAA TAACCTGCTC GATGAAGAGA TCATCTCAGA TCGTAACTAC TTCAGCCCCG GCCGCCAACT GTTTTTAAGC GTGAGCTACC AGGCTTTTTA A
|
Protein sequence | MSFKLRLSVL TIAICQTFSA AATAPANPVD DIITVTGDRF DNTADQQLTV INTIEREEIA RLNPKSVVDM LETLPGVSVT RNGGAGQSAS ISMRGTNTDH VLVLVDGVRI GSATLGAVSF NALTPENIER IEVVKGPRAA VWGSDAIGGV IQIFTRKLEG GEWYASAEYG SDDYMRASAG AGVSHGDGHT SISINREKSD GYDIKNDAED DNDGYDRLGV SVNGLQNLNQ QWQLTWAGQL ESGNYEYDNM GYYGPGVNEA DYDNYLVNIA AQYQTEKLTS KLALGQSRDK NENFRAEDPS LGVNLYETTR DQLNWSNRYT ANDDLTFIGG VDWSKESIEG DYAVDERDLL GIYGLARYQI GKLLMEGVIR YDDVENIDSE TSYNASLAYQ FNDQWRVTAS SGTGFKAPSF NDLYWPDSGN PELVSETSEN LDLTISYTGD YLRGYLSIYQ NKIDNLIQWA PTGEKDDYGY DIWKPDNIED AEITGVELSL NYSTWDIEHQ LGYSYIDAVD GESDEQLVGR SEHEFDYALS YTWSEFDLLV NYHYQGERNA GDYDYDGVTD FLDAYHQVDM SIGYKLAEAW QLRLKANNLL DEEIISDRNY FSPGRQLFLS VSYQAF
|
| |