Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2157 |
Symbol | |
ID | 5612021 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 2609805 |
End bp | 2611262 |
Gene Length | 1458 bp |
Protein Length | 485 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 640933061 |
Product | cobyric acid synthase |
Protein accession | YP_001473894 |
Protein GI | 157375294 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG1492] Cobyric acid synthase |
TIGRFAM ID | [TIGR00313] cobyric acid synthase CobQ |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.711251 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCGGAT ATAAATTGAT GGTGCAAGGC ACCACCAGTG ATGCAGGTAA AAGCGTTATG GTTGCCGGGC TTTGCCGGGT TCTGGCACGT AAAGGTATCG CCGTGGCCCC TTTCAAGCCG CAAAATATGG CACTCAACAG CGCCGTCACC CCCGATGGCG GCGAGATTGG CCGAGCCCAG GCTGTACAAG CGCAGGCCTG CAACCTCCCC TTGAGCGTGC ATATGAATCC GGTACTGCTT AAACCCAATA CCGATACGGG GGCTCAGGTG ATCATTCGCG GCAAGGCCAT AGAGGATATG GATGCCGTCA GTTACCACAC CTTTAAACCC CAACTGCTCG AGATGGTATT AGAAAGTTTC GAGTTCCTGG GAAAAGGTAT GCAGGCCAGA TTGGTCGAAG GCGCGGGTAG CCCTGCAGAA GTTAATCTTC GCGAACACGA TATTGCCAAC ATGGGCTTTG CGCTAGCGGC AAAGACGCCT GTGGTGATCG TTGCCGACAT CGACAGAGGC GGCGTTTTCG CGCACCTCTA TGGCACATTC GATCTTCTGT CCGATGAAGA GAAGCTGTTG GTTAAGGGCT TTATCATCAA CCGTTTCCGA GGCGATGTCA CCCTACTGGA AAGCGGCCTT ACCTGGCTCA CCGAAAAAAC CGGCGTGCCT GTGCTGGGCG TTGTGCCCTA TCTGCATGGT CTGTATCTGG AGGCGGAAGA TGCCATCAAT CAGCAGCAGC TCGATGATGA TACCCATTTT AAGATCGTCG TTCCCGGCCT GCCACGAATA AGTAATCATA CCGATTTTGA TGCCCTGAGA CTTCACCCCG GTGTCGATCT CTGCTTTGTT AAGCCCGGTG ATGATCTGCC GCCTGCAGAC TTAATTATTC TCCCCGGATC CAAGAGTGTC CGCGGCGATC TAATGGCGCT CAGAGATCGC GGATGGGACA AGCAGATCGC TCGTCATCTT AGATTTGGCG GAAAGTTGAT CGGGATCTGT GGCGGCTATC AGATGCTCGG TCGCAGCATT GATGATCCCC ATGGCGTCGA AGGAGAACAG GGCAATAGTG AAGGGCTTGG CTATCTCAAC GTTACAACCA CTCTTGATAC TCAAAAAACC TTAAAACAGG TAAGTGGTGA ACTGCAGCTG AATGGCAAAA CTCATCCGGT TACAGGCTAC GAGATACATG CCGGTGTCAG TGAGGTAAAT GAATTGCAAC CTGTTACTTT AAATGGCCAG CTCGACGGCG CACTAGGTTG TGACAATCAA GTACTGGGTA GTTACCTGCA TGGCATCTTC GATGAGCCAG ACGCCTGTAA TGCACTGCTC AATTGGGCAG GCTACCAGCA ACAAAAAGCA CAGGATATGT CGGCGCTCAG AGAAGAGAAC CTTAACCGGC TCGCCGATAG TCTGGAGGAG TCGTTAGATC TTGATTCGTT GTTTAGCGGC ATCGAGGGCT GGCGCTAA
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Protein sequence | MSGYKLMVQG TTSDAGKSVM VAGLCRVLAR KGIAVAPFKP QNMALNSAVT PDGGEIGRAQ AVQAQACNLP LSVHMNPVLL KPNTDTGAQV IIRGKAIEDM DAVSYHTFKP QLLEMVLESF EFLGKGMQAR LVEGAGSPAE VNLREHDIAN MGFALAAKTP VVIVADIDRG GVFAHLYGTF DLLSDEEKLL VKGFIINRFR GDVTLLESGL TWLTEKTGVP VLGVVPYLHG LYLEAEDAIN QQQLDDDTHF KIVVPGLPRI SNHTDFDALR LHPGVDLCFV KPGDDLPPAD LIILPGSKSV RGDLMALRDR GWDKQIARHL RFGGKLIGIC GGYQMLGRSI DDPHGVEGEQ GNSEGLGYLN VTTTLDTQKT LKQVSGELQL NGKTHPVTGY EIHAGVSEVN ELQPVTLNGQ LDGALGCDNQ VLGSYLHGIF DEPDACNALL NWAGYQQQKA QDMSALREEN LNRLADSLEE SLDLDSLFSG IEGWR
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