Gene Ssed_2151 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_2151 
Symbol 
ID5610423 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp2604163 
End bp2604561 
Gene Length399 bp 
Protein Length132 aa 
Translation table11 
GC content42% 
IMG OID640933055 
Producttransporter 
Protein accessionYP_001473888 
Protein GI157375288 
COG category[S] Function unknown 
COG ID[COG2259] Predicted membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.447191 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.895246 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATACCT TACAAGTTTT TGCAGCCCCC TTAGGCCGCT TTTTGATAGC AATTATTTTC 
TTTCTGTCTG GCGTCACTAA GGTTACTCAA TATGCAGGCA CTCAAGGCTA CATGGAATCG
ATGGGCGTTC CAGGAGCCTT GTTACCTTTG GTGATCCTTA CGGAAGTCAT TGGCGGAGTC
GCAATTATCA TTGGTTGGAA AACCCGCTAC GCAGCTATAG CACTGGCCGG TTTTAGTGTT
TTAGCCACTG TGTTTTTTCA TAATGATTTC AGTGTTCAAG CTGAAATGAT TAGTTTCATG
AAAAACCTGG CAATTGCCGG TGGTTTTTTG ATGATATTCG CCAATGGACC AGGCTCATAT
GCATTGGATA ATCGATTAAA GAAGAAATAT AACGAATAA
 
Protein sequence
MNTLQVFAAP LGRFLIAIIF FLSGVTKVTQ YAGTQGYMES MGVPGALLPL VILTEVIGGV 
AIIIGWKTRY AAIALAGFSV LATVFFHNDF SVQAEMISFM KNLAIAGGFL MIFANGPGSY
ALDNRLKKKY NE