| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2150 |
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| Symbol | |
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| ID | 5610532 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2601821 |
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| End bp | 2603830 |
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| Gene Length | 2010 bp |
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| Protein Length | 669 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640933054 |
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| Product | outer membrane protein |
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| Protein accession | YP_001473887 |
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| Protein GI | 157375287 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR03509] decaheme-associated outer membrane protein, MtrB/PioB family |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0260254 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.662224 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAATTTA AATTAAGTCT TATCACATTA GCGCTGGCAA CCTGTAGCAG TGGTGCTTTT
GCATTCGATT TTGGCGTCAC ATCGGCCAAC ACTCAGACAA ACACCAACGC AAAATGGGCC
TGTAAGAAGT GCACCAGTAA AAAATCTGTT ATCGGACAAG CCGGTATCGA GCTTGGTTCC
ATGAACAGCG ATGACGATCA TGCGGCCAAT AACCTTAAAT ATACCGATGG GTTCGCCGCC
GGCGTCAATG CCGACGTTGT CTATAACAAC AAGGGTTATC GCACAGAAGT TGTTGCCGAC
CAGTTAGGCA GCGAGCAGGG CTATGGGGCC ATTAAAACCG GCAGGCTGGG TGTATGGAAC
GTAAAGGCCA GCTACGATGA GAAACGACGC GATAACGCTG ATAACGCCGA GAGTGTCTGG
TTAGCCGATG GCAACAGCCT TATCGCACAG GATGAGATGG TCACTCAACA GTTGGCCTTA
GAGCGAAAAA AATCTGCCAT CGAGACAAAG CTCAAATTAG ATAATGTGGC CAGCTACATT
CGTTTTTCAA GTGAGGATAA AACGGGTAAG CATACTTCGA GTATGACTAA CGGCGGTATC
AAGGCCATTA ATATTGCCGC GCCTATCGAC ACGCAAACAC AGAACATGGC GGCAGGCGTG
AGCCTCAGTG GCCAGAACTG GTTAACCGAG CTCAGTTATA AAGGCAGCTG GTTCGAAAAT
GATATCGATT CGTTGCAGCT TAACGGCATG GGGTATCCGG TAAGCTCGCA AGCACCGGAT
AACCAGTCTC AGTTCGTCAC TCTTACGGGC CGATACTCTC TGAGCAGGAC CCATTTCAGT
GGTCGCATCA GCCAGGGTAG TATGACCCAA GATGCCGATT TTGTGACGCT TAGTGGGGTC
ACATCAGGAC CGGGGAACGC CGATACACAA GTCGACACCT TAGATGCTAA CTTCAAAGTT
ACCAGCACTG TGATGTCAGG TTTAAGGCTC AAGGCGTCGG TCGATTACTC AGATAGAGAT
AATAAGACCG ATGTCAGGAT GTATGAGCAA TACAGCTATG ATGAGCTCAG TGGCGATTTT
AAAGCAAATA CCCCGCTCGA TACGACTCGT ACAGCGTATA AAGCTAGCGC GAGTTACAGT
CTGGCAAAGG GGCAACGTAT AGAGGCCGGA TATGATCGCA TCGAAACTGA GCGCTCTAAT
CAGGATCGTG AAGAGACCGA TGACAATATT TTCTGGGCAC AGTGGCGAGT CACTGGCTTA
GAGATGTGGG ATATTCGCTT AAAGGGGCTT TACAGTGACC GCGGTGGCTC CGAGTTCGTC
TATGACCAGC TGAGTGAAAG TGGTGAAAAC ACCCTGATGC GTAAATATTA TCTGGCCGAT
AAGAAGAGCA GCAGAGCCGA GTTATTTGTT ACCCATGCGC CACTCGATAC GCTGAGTCTT
AGTTTCAGAG GCTATTATGG CCTGGACGAT TATACCAATA CTGAAATTGG CTTAGTCGAG
TCTAAAGATT ATGGATACGA CCTGGGTTTG AGCTGGCAGG CACTGCAAGA CTTAAGCGTT
AATATCGATG GTGGTTACCA ATGGATCGAC AGCGACCAAG CCAGCGCACA GACCACTAAC
CTGGATATGT GGCAAGCCGA TACCGAAGAT CAGTTTGGCT TCGCCGGCAT CGGCTTCAAC
TACACTGGCT TGAGTGATAA AGGAATAAAC TTAAGTGCCG ATTATAGCTA CGCGATCTCT
ATCAGCGACA GCTATTCAAA TGGTTACAAT GCCTTAGGTG ATTATGAGTC CACCAGCCAT
AACGTGACGT TCCAAGCGAC CTACGCGATG ACAGAGCAGG CAATTGTAGG GCTTAAATAT
CAGTTCGAAC GATACCGTGA CTCTGATGAT ACCCAGCTGC CGACCTATTA CTACCCGGGA
ACAGGCCCGA CTGGCCTAAA CACTTTAGGC GTATTGAATC ATGATTATGA TGCCCATTTG
ATACTGGCAA CTTTACAGTA TCGTTTTTGA
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| Protein sequence | MKFKLSLITL ALATCSSGAF AFDFGVTSAN TQTNTNAKWA CKKCTSKKSV IGQAGIELGS
MNSDDDHAAN NLKYTDGFAA GVNADVVYNN KGYRTEVVAD QLGSEQGYGA IKTGRLGVWN
VKASYDEKRR DNADNAESVW LADGNSLIAQ DEMVTQQLAL ERKKSAIETK LKLDNVASYI
RFSSEDKTGK HTSSMTNGGI KAINIAAPID TQTQNMAAGV SLSGQNWLTE LSYKGSWFEN
DIDSLQLNGM GYPVSSQAPD NQSQFVTLTG RYSLSRTHFS GRISQGSMTQ DADFVTLSGV
TSGPGNADTQ VDTLDANFKV TSTVMSGLRL KASVDYSDRD NKTDVRMYEQ YSYDELSGDF
KANTPLDTTR TAYKASASYS LAKGQRIEAG YDRIETERSN QDREETDDNI FWAQWRVTGL
EMWDIRLKGL YSDRGGSEFV YDQLSESGEN TLMRKYYLAD KKSSRAELFV THAPLDTLSL
SFRGYYGLDD YTNTEIGLVE SKDYGYDLGL SWQALQDLSV NIDGGYQWID SDQASAQTTN
LDMWQADTED QFGFAGIGFN YTGLSDKGIN LSADYSYAIS ISDSYSNGYN ALGDYESTSH
NVTFQATYAM TEQAIVGLKY QFERYRDSDD TQLPTYYYPG TGPTGLNTLG VLNHDYDAHL
ILATLQYRF
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