| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2149 |
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| Symbol | |
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| ID | 5610531 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2600895 |
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| End bp | 2601809 |
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| Gene Length | 915 bp |
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| Protein Length | 304 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640933053 |
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| Product | cytochrome c family protein |
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| Protein accession | YP_001473886 |
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| Protein GI | 157375286 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR01905] doubled CXXCH domain
[TIGR03508] decaheme c-type cytochrome, DmsE family |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0950345 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.491991 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACGATGA AAATATTTAA TGTGATGAGT GTTGTGCTCG TTCTTTTATC AGGCATATCT
ACGGGGGTCG GCGCCGATCC CCTCGATACG TTAATGAAAA AGTTTGAGGA GGGTAAATAT
TCGAAGAAGG GCGCAGATAC TTGCATTATG TGCCATAAGC GCTCCGATAA GGTGATGGCT
ATCTTCGATA GTGTGCACGG GCAAGCGAAC AGTAAGAGCC CAATGGCCGG ACTTCAGTGC
GAAGCCTGTC ATGGTCCTCA GGGGAAACAC AAGGGTAAGA ACGAGCCTAT GGTGACCTTC
GGTGAATCGT CGCCTTTAAC GGCAGAGATG CAAAACTCGG TCTGTACCGC GTGTCATAAC
GATACCAGCC GTGTTGCCTG GCACACGTCC TTGCATGCAG AACAAGATGT GAGCTGTGTA
AGCTGTCATC AACTGCATGT CACTAAAGAT CCTGTGCTGG TTAAAGATCA ACTGGTAGAG
GTATGTAGTG AGTGTCATAT CAGCGCAAAA GCCGATATGA ACAAGCGTTC CAGCCATCCA
TTGAAGTGGG GCGATATGAC CTGTAGTGAC TGTCATAACC CTCATGGTTC GATGAGTGAT
TCGGCATTAA ATGAAATTGA TGTTAATCAA ACCTGTTTCG AATGCCATGC TGAAAAACGC
GGTCCATTCC TTTGGGAACA TGCGCCGGTG ATGGAAAATT GCGCCAATTG TCATGATGCC
CATGGCAGCG TAAATGAAGC ACTGCTCAAA TCAAGAGTGC CAATGCTTTG TAAGCAGTGT
CATGCCAACG ACGGACACGC AGGCACTGCG CCTGGTGATA ACTCGAGTAT TCAAACCGGC
GGTCAAGGTT GTCTCAATTG TCATGGTCAG ATCCACGGCT CGAATCATCC ATCTGGTAAA
GCATTTCAGT TTTAA
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| Protein sequence | MTMKIFNVMS VVLVLLSGIS TGVGADPLDT LMKKFEEGKY SKKGADTCIM CHKRSDKVMA
IFDSVHGQAN SKSPMAGLQC EACHGPQGKH KGKNEPMVTF GESSPLTAEM QNSVCTACHN
DTSRVAWHTS LHAEQDVSCV SCHQLHVTKD PVLVKDQLVE VCSECHISAK ADMNKRSSHP
LKWGDMTCSD CHNPHGSMSD SALNEIDVNQ TCFECHAEKR GPFLWEHAPV MENCANCHDA
HGSVNEALLK SRVPMLCKQC HANDGHAGTA PGDNSSIQTG GQGCLNCHGQ IHGSNHPSGK
AFQF
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