| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2140 |
|---|
| Symbol | |
|---|
| ID | 5610550 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 2588337 |
|---|
| End bp | 2590211 |
|---|
| Gene Length | 1875 bp |
|---|
| Protein Length | 624 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640933044 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001473877 |
|---|
| Protein GI | 157375277 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.0440524 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACAAAC TCCTATTAGC CGCACTCCTA TCTGCGGTAT TAGTTTCCGG CTGCAGTGAG
GACAGTAATG ATACTGCATC GTCACCAGTC GTTCCCCCAT CACCGGCAAA AGAGTATTCG
ACTATCGATG TCACCCCTGC AGCAAAATTT GAAGGCTCTA TTACCGTAAG ATTGGGGCGG
TTCGATGATA AATACAAAGC CTGGCGTTTG AGCGGTGAGG CGAAAGACAT CCATAACGAT
GGTCACATCG ATGAAATGGA TGCTCAGGCG CTAAAAATCG TCAACGAGCT CGAGCCAGCC
ATTGTTATTG ATGCTAAAAA GATGCACTCC TTGCTGCAAA CCAATCCCGA TGGACTCGGA
AAAGGATCGG CAAGAGCGGA CATTTTTGTC AACGGTCACT ATTCTGTATT TGATGTTTTA
CGTTACCTGG CTCTAACCCG TGATGATATT AAGCTCGAAA ATGTTATCGA CTATAAAGAT
ACCGATCTTG ATACTTATCA ATTTACCATC TCCTGGGATC AAAATGGTGA TGGGATCTTC
GATGCGCAGG ACATCGAAAG TTTTAACAGT TCAGGCTGGC ATTTTAGATT TAAATTTGAT
GGTGGTGAGT TACGCAGAAT AACCGGCAGT CTTGACGGAG TTGGCCCCGA GGGGGAAGCC
CACTATGAAC GCATGGATCA GTTCTGGGTA CAACCCGGAA TGGATCTTAG ATTTCAGCCA
TTCAATGCAG AGATGACTGC AAGACGAATA TGGGTGATGA AGCAAGAGAT GGAACGATAC
CGACAGGCAG GAAATAAGGT AATACTCCCA GAGCTTGTTG CCTCATTCGA CGGTGGCAAA
AGCTATGAAA CATTAGTGAC AGATCTGGAA GTCACGGCCC ATAATATTAG GCCCGATATC
TTTCAGCCCG GCGTCATAAC AGGAATTGAT GCATTCCTGT CGGCTAAAGA TATGGAACAC
GATTTTGTGA TCAATTACTG GCCAACCGTC GCCAGTAAAG CGCCGGTAGG ACATTATGCC
CTGTTCAGCG TAAACGGAAA AAACTCCAGG GTTGGCGCAG GCTGGACAAC CCGCTTTGGT
GAGAAGTCTA CTCTCAATGA CTTTGCCCCA TTTACAAAAT GTGATTTTGG CAGTGACGGG
ACTCAAAACG GTGAGCCTAA GGTGAGCCAT AAGGCTTGTT GGGCGGAGTG GAATACCTAT
TTCGGGGGCA ATATGCTTCA CCTAATGACA GATGTCTGGG TGATGAATCA AGCCGTCGAA
CAAGTCCATC TCATCTATAA GAGTCATTAT GATATTTTCG GTATGGAGGA GTTCAACGGC
AAGATCCCAA CTGAGCGAGA CTTCAGCCAA TCCAATGATG GCAGTGACAT GGTGTCACTC
AGAACACTAT CTCTTCCAAA ACCAGAAACA TCGACACTGC CGATATTAAA AGAATCACAT
TTTGGCTGGG GGATCGCCAA TTGTGAAAGC TGCCACAATG ACAAGCTCCC CCAAGGCCAT
GGCGGTTATT CATGGCCGGT TAACAGTGTC GATGGCTTCA ATAGCATTCA GCCTTACTAT
TGCGCCAGCT GCCATGGCAG CAACGGAGCA CCATTGGGCC ACGGCGAAAC GGCCCGTTGC
TACTGGTGTC ACTCAGAGGA CCAATTACCA AAAAATCACG GAGAAGCCTC AGTAAAGCAG
TGGCTCCGCG GTGCAGAAAA CCTGGAAGGT AACTGGCATA ACTATAATAT TCCTGCTTCG
ACTCTGCCCA GAGATGCTGC AGGCAACTAT GCCCCCTATA CCGAGATCCT GAGTACAATT
AACTCTGATT GGAACATGAG TAAGTCGTTC CCGGATCCAT ACTCCTGTAT GACCTGTCAC
CCAAACCCTG AATAA
|
|---|
| Protein sequence | MNKLLLAALL SAVLVSGCSE DSNDTASSPV VPPSPAKEYS TIDVTPAAKF EGSITVRLGR
FDDKYKAWRL SGEAKDIHND GHIDEMDAQA LKIVNELEPA IVIDAKKMHS LLQTNPDGLG
KGSARADIFV NGHYSVFDVL RYLALTRDDI KLENVIDYKD TDLDTYQFTI SWDQNGDGIF
DAQDIESFNS SGWHFRFKFD GGELRRITGS LDGVGPEGEA HYERMDQFWV QPGMDLRFQP
FNAEMTARRI WVMKQEMERY RQAGNKVILP ELVASFDGGK SYETLVTDLE VTAHNIRPDI
FQPGVITGID AFLSAKDMEH DFVINYWPTV ASKAPVGHYA LFSVNGKNSR VGAGWTTRFG
EKSTLNDFAP FTKCDFGSDG TQNGEPKVSH KACWAEWNTY FGGNMLHLMT DVWVMNQAVE
QVHLIYKSHY DIFGMEEFNG KIPTERDFSQ SNDGSDMVSL RTLSLPKPET STLPILKESH
FGWGIANCES CHNDKLPQGH GGYSWPVNSV DGFNSIQPYY CASCHGSNGA PLGHGETARC
YWCHSEDQLP KNHGEASVKQ WLRGAENLEG NWHNYNIPAS TLPRDAAGNY APYTEILSTI
NSDWNMSKSF PDPYSCMTCH PNPE
|
|---|
| |