| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2131 |
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| Symbol | |
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| ID | 5610576 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2579133 |
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| End bp | 2580419 |
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| Gene Length | 1287 bp |
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| Protein Length | 428 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640933034 |
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| Product | seryl-tRNA synthetase |
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| Protein accession | YP_001473868 |
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| Protein GI | 157375268 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0172] Seryl-tRNA synthetase |
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| TIGRFAM ID | [TIGR00414] seryl-tRNA synthetase |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0131347 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0177706 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTAGATC CAAAATTTTT ACGTACAGAA TTAGAAGCTA CGGCCGAGCG CCTGGCAACC
CGCGGTTTTA TTCTAGATGT TGAGCGTCTA AGTAAGTTAG AGGAAAAGCG AAAGTCGTTG
CAAATGGCGA CTGAAGAGCT GCAAGCTTCC CGTAATGCAA TATCCAAATC CATTGGACAA
GCAAAAGCGA AAGGGGAAGA TGTTGCACCT ATCATGGCTC AAGTGGGCGA TCTTGGTTCG
CAACTCGATA CAAAGAAGCA GGAGCTGGCA GAGTTACTCG AGACACTGAA TGCTATTGCC
ATGAGTGTGC CAAACTTACC TGACGAATCT GTGCCTGCCG GTGCCGATGA AAGTGAAAAT
GTCGAGGTTA GACGTTGGGG CACACCTAAA GAGTTTAACT TTGAAGTGAA AGATCACGTC
GAACTCGGTG AAACTTTAGG TGGATTAGAT TTTAAAGCCG CGGTTAAAAT TACCGGTACA
CGCTTCATTA TCATGAAAGG GCAAATTGCC CGCATGAACA GAGCACTGGC GCAGTTCATG
CTGGACCTTC ACACGACAGA GCATGGCTAT ACTGAAGCCT ATGTTCCTCT GTTGGTTAAT
GAAGAGAGCT TGCTTGGTAC GGGTCAGCTA CCTAAATTTG GTGAAGACCT TTTCCATACC
AAGCCTGCAA CTGAAGAAGG CCAAGGTCTA AGCCTTATCC CAACGGCTGA AGTACCGTTA
ACTAATATCG CGCGCGATAC CATCATCGAT GAAGCAGATC TTCCGGTTAA GTTGACTGCT
CATACACCTT GTTTCAGAAG TGAAGCGGGA TCTTACGGTC GTGATACTCG TGGTTTGATC
CGCCAACACC AATTCGACAA GGTTGAACTG GTTCAATTGG TTAAGCCTGA AGATTCTATG
GCTGCATTAG ATTCATTAAC AGGTCATGCA GAAACGGTTC TTCAGAAGCT GGAACTTCCT
TATCGTACCG TTGTTTTATG TACGGGCGAC ATGGGCTTCG GTTCAAGCAA AACCTTCGAT
ATTGAAGTTT GGCTACCAGC TCAAAACACC TATAGAGAGA TCTCATCTTG TAGCAACATG
CAAGACTTCC AGGCTCGTCG TATGCAAGCC CGTTACAAGG CTAAGTCAGC GAAAAAACCT
GCACTATTAC ATACATTAAA TGGCTCCGGA CTCGCTGTAG GTCGTACGCT CGTAGCGGTA
ATTGAAAACT ACCAAAATGA AGACGGTAGC ATCACAGTAC CTGAAGTTTT ACGTCCATAC
ATGGGCGGTT TAGAAAAGAT CGGTTAA
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| Protein sequence | MLDPKFLRTE LEATAERLAT RGFILDVERL SKLEEKRKSL QMATEELQAS RNAISKSIGQ
AKAKGEDVAP IMAQVGDLGS QLDTKKQELA ELLETLNAIA MSVPNLPDES VPAGADESEN
VEVRRWGTPK EFNFEVKDHV ELGETLGGLD FKAAVKITGT RFIIMKGQIA RMNRALAQFM
LDLHTTEHGY TEAYVPLLVN EESLLGTGQL PKFGEDLFHT KPATEEGQGL SLIPTAEVPL
TNIARDTIID EADLPVKLTA HTPCFRSEAG SYGRDTRGLI RQHQFDKVEL VQLVKPEDSM
AALDSLTGHA ETVLQKLELP YRTVVLCTGD MGFGSSKTFD IEVWLPAQNT YREISSCSNM
QDFQARRMQA RYKAKSAKKP ALLHTLNGSG LAVGRTLVAV IENYQNEDGS ITVPEVLRPY
MGGLEKIG
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