| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2129 |
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| Symbol | |
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| ID | 5610574 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2577416 |
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| End bp | 2578747 |
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| Gene Length | 1332 bp |
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| Protein Length | 443 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640933032 |
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| Product | recombination factor protein RarA |
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| Protein accession | YP_001473866 |
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| Protein GI | 157375266 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG2256] ATPase related to the helicase subunit of the Holliday junction resolvase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0000081607 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0213472 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTCAAGTT TTAGTTTCGA TTTTGCGCCC GACTTTAGGC CTTTGGCCGC TCGAATGCGG
CCTGAAACCA TATCTCAGTA TATTGGTCAA ACCCATCTTT TAGGTGAGGG GAAACCCCTT
CGTAAAGCCC TCGAGGCCGG GCGTGCCCAC TCTATGATGT TCTGGGGACC GCCTGGTACC
GGAAAGACAA CGTTGGCAGA GTTAGTGGCT AACTATGCCA ATGCGCATGT CGAACGCATT
TCGGCAGTGA CATCGGGTGT CAAAGAGATC CGCACTGCTA TCGAGCACGC AAAGAATGTT
GCCGAATCCA GAGGACAAAG AACCTTACTC TTTGTCGATG AAGTGCACCG TTTCAATAAG
AGTCAGCAAG ATGCCTTTCT TCCGTTCATC GAAGATGGGA CTGTGATATT CGTTGGTGCG
ACGACAGAGA ATCCCTCTTT CGAGATCAAT AATGCCCTGT TATCGCGTGC ACGGGTTTAC
CTGATTAAGA AGTTGACGAA CGATGAGATT GTGCACATCG TTAGACAGGC GCTGACAGAT
GAGGAGCGCG GTCTGGGTAA GCGTAAGTTA CTGATCCCGG ATAATGTTGC GCTAAAGCTC
GCCAATGTAT CTGAAGGTGA TGCGCGTAAG GCATTAAACC TGATTGAATT GATGAGTGAT
ATGCTTGCCG ATGGTGGCAG TTTCAGTGAG GAGATGATCA TAGAAGTTGC TGGTCAACAA
CTGGCAGGCT TCGATAAAAA TGGCGATCAA TTCTACGATC TTATCTCCGC TGTGCATAAA
TCCATTCGTG GTTCTGCGCC GGACGCGGCC TTGTATTGGT TTTGCCGAAT GTTGGAAGGA
GGATGTGATC CTCTTTATAT CGCACGTCGA TTACTGGCCA TTGCGTCTGA AGATATCGGT
AATGCCGATC CGGTGGCTAT GACGGTGGCA CTCAACGCAT GGGAATGTTT CCACCGCGTC
GGACCATCGG AAGGGGAAAG AGCCATCGCT CAGGCGATAG TTTACCTCGC GAGTGCTCCA
AAGAGTAATT CAGTCTATAC GGCATTTAAA GCCGCGAGAC AATTAGCCCG CGAAACAGGT
CAAGAAGCCG TTCCTGAGCA CCTACGTAAT GCACCCACAC AGTTGATGCA AGACCTCGGA
TATGGCGAAG GCTATCGCTA CGCACATGAT GAGCCAAACT CCTATGCGAG CGGTGAATGT
TATTTCCCCG AAGGTTTGGC AGAATCCCGG TTTTACTACC CGACGGAACA TGGTTTTGAG
AAGCGAATAA AAGCTAAATT AGAACATTTG GCGCAACTTG ATAGAGACAG TGAGATCAAA
CGGTATGAAT AA
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| Protein sequence | MSSFSFDFAP DFRPLAARMR PETISQYIGQ THLLGEGKPL RKALEAGRAH SMMFWGPPGT
GKTTLAELVA NYANAHVERI SAVTSGVKEI RTAIEHAKNV AESRGQRTLL FVDEVHRFNK
SQQDAFLPFI EDGTVIFVGA TTENPSFEIN NALLSRARVY LIKKLTNDEI VHIVRQALTD
EERGLGKRKL LIPDNVALKL ANVSEGDARK ALNLIELMSD MLADGGSFSE EMIIEVAGQQ
LAGFDKNGDQ FYDLISAVHK SIRGSAPDAA LYWFCRMLEG GCDPLYIARR LLAIASEDIG
NADPVAMTVA LNAWECFHRV GPSEGERAIA QAIVYLASAP KSNSVYTAFK AARQLARETG
QEAVPEHLRN APTQLMQDLG YGEGYRYAHD EPNSYASGEC YFPEGLAESR FYYPTEHGFE
KRIKAKLEHL AQLDRDSEIK RYE
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