| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2128 |
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| Symbol | |
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| ID | 5610661 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2576780 |
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| End bp | 2577406 |
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| Gene Length | 627 bp |
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| Protein Length | 208 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640933031 |
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| Product | outer membrane lipoprotein carrier protein LolA |
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| Protein accession | YP_001473865 |
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| Protein GI | 157375265 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2834] Outer membrane lipoprotein-sorting protein |
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| TIGRFAM ID | [TIGR00547] periplasmic chaperone LolA |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0000000303746 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0168034 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGAAAGA CCCTATCAAT ACTCGCTATC AGTCTGCCAC TATTGGTCTC GGGTTACGCT
CAGGCCAGTG AGTCAGGAGT GTTAAAAGCA AAACTTGCCG AGATATCGAC CCTAAAGGCA
AACTTTACCC AGACAGTGAC TGATGTTAAT AAAAAAGAGA TCCAGAAAGG GAGTGGTGTA
TTTGCACTGG CTTATCCGAA TCAATTTTAT TGGCATCTCA CGGAGCCGGA TGAATCATTA
ATCGTTGCCG ATGGACGTGA TGTTTGGATC TATAATCCAT TTGCAGAAGA GGTCTCTGTG
ATGGATCTCA ATCAAGCAAT CAATGCATCG CCGATTGCAC TTTTGGTTCA TCGGGATGAA
GAAACCTGGT CAAAATACAC TGTAACAAAT GAAGAGGGGT GTTTTAGTAT CGCTCCGAAG
AGTGTCGATG CGGGGGTTGA ATCGGTCGAT GTGTGTTTCG ACGGAAACAC CCTGACCCAA
ATGGTGCTGC AAGACCAGCA GGGCAATGTA AGCCAATTTA TGTTATCGGA TCAAACTGCC
ATCAGCGATG ACGAGCTCTC CATGTTTAAA TTTACCGTTC CGGATGATGT TGATATCGAT
GATCAGCGTC TTAATACCGT CAATTAA
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| Protein sequence | MRKTLSILAI SLPLLVSGYA QASESGVLKA KLAEISTLKA NFTQTVTDVN KKEIQKGSGV
FALAYPNQFY WHLTEPDESL IVADGRDVWI YNPFAEEVSV MDLNQAINAS PIALLVHRDE
ETWSKYTVTN EEGCFSIAPK SVDAGVESVD VCFDGNTLTQ MVLQDQQGNV SQFMLSDQTA
ISDDELSMFK FTVPDDVDID DQRLNTVN
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