| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2125 |
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| Symbol | |
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| ID | 5610658 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2572169 |
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| End bp | 2573284 |
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| Gene Length | 1116 bp |
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| Protein Length | 371 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640933028 |
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| Product | alanine dehydrogenase |
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| Protein accession | YP_001473862 |
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| Protein GI | 157375262 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0686] Alanine dehydrogenase |
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| TIGRFAM ID | [TIGR00518] alanine dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000000258427 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.0430396 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATAATTG GTGTACCTAA AGAAATCAAA AACCACGAGT ATCGTGTTGG AATGGTCCCT
TCAAGTGTAC GTGAATTGAC AAATAAAGGT CATACGGTCT TTATTGAAGC AAACGCAGGT
ACTGGGATTG GTTTTACAGA TCAAGACTAT ATCGATGTTG GCGCATCAAT TTTAGCTACC
GCGGCAGAAG TATTTGCCAC AGCGGAAATG ATTGTAAAAG TCAAAGAGCC ACAGGCAGTT
GAGCGCGCAA TGTTACGCGA AGATCAGCTA CTGTTTACCT ATTTACACCT TGCACCAGAT
CTCCCACAAA CTGAAGATTT AGTCAAAAGT GGATCAGTTT GTATCGCTTA CGAAACTGTG
ACCGATGACC GCGGCGCCCT CCCCCTTCTC GCACCTATGT CTGAAGTTGC CGGCAGAATG
TCTATTCAAG CGGGTGCCAT GGCACTTGAA AAAAACATGG GCGGTCGTGG TATGCTACTC
GGCGGAGTAC CGGGTGTTGA GCCTGCAAAA GTCGTGATAA TAGGCGGTGG CATGGTGGGT
ACTAATGCTG CGCAGATGGC TGTAGGTTTG GGTGCAGAAG TTGTTATTCT TGACCGTAAC
ATCGATACAC TAAGACGCCT TAATGTTCAA TTCGATAATA AGGTAAAGGC TATCTATTCA
ACGGCTGACG CCATTGAAAA GCATGTTCTC GAAGCCGATT TAGTTATTGG TGGCGTACTG
GTTCCAGGTG CAGCAGCCCC TAAGCTCGTC ACTAAAGACC ACATCAAGCG CATGAAGCCT
GGCTCTGCAA TCGTCGACGT TGCAATCGAT CAAGGTGGTT GTATCGAGAC TTCACATGCT
ACCACTCACC AAGATCCTAC CTATATCGTA GATGACGTGG TTCACTATTG TGTGGCTAAC
ATGCCAGGTG CCGTAGCACG TACGTCAACG TTCGCACTAA ACAATGCAAC GCTGCCTTAT
ATCATTAAGC TTGCCGAGCT TGGTTATAGA AAAGCACTGT TGCAAGACAA ACATCTGCTA
AATGGTCTTA ACGTCATGCA TGGCAAGATC ACCTGCAGTG AAGTTGCTGA AGCACTGAAC
ATGGAATTTG TTGACCCAGC AATCTTACTT AACTAA
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| Protein sequence | MIIGVPKEIK NHEYRVGMVP SSVRELTNKG HTVFIEANAG TGIGFTDQDY IDVGASILAT
AAEVFATAEM IVKVKEPQAV ERAMLREDQL LFTYLHLAPD LPQTEDLVKS GSVCIAYETV
TDDRGALPLL APMSEVAGRM SIQAGAMALE KNMGGRGMLL GGVPGVEPAK VVIIGGGMVG
TNAAQMAVGL GAEVVILDRN IDTLRRLNVQ FDNKVKAIYS TADAIEKHVL EADLVIGGVL
VPGAAAPKLV TKDHIKRMKP GSAIVDVAID QGGCIETSHA TTHQDPTYIV DDVVHYCVAN
MPGAVARTST FALNNATLPY IIKLAELGYR KALLQDKHLL NGLNVMHGKI TCSEVAEALN
MEFVDPAILL N
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