| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2117 |
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| Symbol | |
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| ID | 5613516 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2564557 |
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| End bp | 2565933 |
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| Gene Length | 1377 bp |
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| Protein Length | 458 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640933020 |
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| Product | MATE efflux family protein |
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| Protein accession | YP_001473854 |
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| Protein GI | 157375254 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0110658 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.0465778 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATCAAT TCGGCTTTCA AGCCAAACGT TTAGTGCAAC TTGCACTACC TGTTCTTATC
GCCCAAGTCA CACAGACCAT GATGGGCTTC ATTGACACAG TAATGGCTGG TCGAGTTAGT
GCAGTGGATA TGGCGGCCGT TGCCGTCGGA ACCAGTCTGT GGCTTCCAGC ACTACTATTT
GTACAAGGCC TGTTGATGGC ATTTACGCCG GTTTTTGCTC ACCAACATGG CGCAAATAAC
CAGAAAGCGA TTCAACCACT CGCTCATCAA GCTGGATATA TTGCCATAAT AGGCAGTATA
GGTGTGATCG TGTTTCTCAC TTTTGCACAA AATATTTTTA CCATGATGGA ATTAGAACCA
GAACTCGCCA GATTGAGTAT CGGTTACCTT AATGGGTTCG CTTGGGGGGT GCCCGCCTTC
GTGCTTTATC AGGTGCTTCG AGGCTGTAGT GAAGGGATCT CTTATACTTT ACCGACTATG
GTTATCGGGT TTGTTGGATT GGCTGTGAAT ATTCCCGCTA ACTATATCTT TATCTATGGA
CACTTTGGGA TACCTGCAAT GGGTGGTGCG GGTTGCGGTA TCGCTACCGC TTTGGTTTTT
TGGGCAATGT TCATTGCCAT GATTATTTAT ATGCAACTAC ATAAAAAGTT TGCTGAACTG
GCACCGTTCA AATCTTTCCA CAAACCAGAT TGGAAAACGA TGTGGGATAT GACCAAGCAT
GGGTTTCCAA TTGCGATGGC ACTATTTTTC GAGGTAAGCC TGTTTGCAGT TATCGCGTTG
TTACTGGCAC CTCTGGGCGC CAATGTTGTC GCAGGACATC AAATTGCACT TAATTTCTCG
TCAATTGTAT TCATGTTACC GCTATCTATT GGTATCGCAG TATCTATTCG TGTCGGTTAT
TACCTGGGTC AAGATAAGGC TCATATATCT AAGCTCATAA CGAAAGTTGG ACTCAGCCTC
TCATTTACAC TGGCAATTAT TACGGCAATC ATTACGGTCT TGTTCAGAAC TGAAATTGCA
TATCTGTATA ATGATAATCC TGAGGTGGTG GCTTTAGCTG GCAGCCTGAT GTTTTTAGCC
GCACTTTATC AGCTGTCAGA TTCGGTGCAG GTTGTCGCTG CAGGTGCACT ACGAGGCTAT
AAAGACACGC GTAGTGCTCT TTATATTACC CTCGTTTCAT ATTGGGCTAT TGGCATGGTG
CTTGGTTATA TACTTGCCAG AACGGATTTG ATTGTACCGC ATATGGGAGC GCACGGCTTT
TGGATTGGGT TAATTGCAGG TTTAACCAGT GCGGCAATTC TATTTGCGTG GAGATTACGT
CATATCCAAA AAACGGGGGA TTTAAAGCAA GTCATCATGG ATACAGGCCA TAAGTGA
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| Protein sequence | MNQFGFQAKR LVQLALPVLI AQVTQTMMGF IDTVMAGRVS AVDMAAVAVG TSLWLPALLF
VQGLLMAFTP VFAHQHGANN QKAIQPLAHQ AGYIAIIGSI GVIVFLTFAQ NIFTMMELEP
ELARLSIGYL NGFAWGVPAF VLYQVLRGCS EGISYTLPTM VIGFVGLAVN IPANYIFIYG
HFGIPAMGGA GCGIATALVF WAMFIAMIIY MQLHKKFAEL APFKSFHKPD WKTMWDMTKH
GFPIAMALFF EVSLFAVIAL LLAPLGANVV AGHQIALNFS SIVFMLPLSI GIAVSIRVGY
YLGQDKAHIS KLITKVGLSL SFTLAIITAI ITVLFRTEIA YLYNDNPEVV ALAGSLMFLA
ALYQLSDSVQ VVAAGALRGY KDTRSALYIT LVSYWAIGMV LGYILARTDL IVPHMGAHGF
WIGLIAGLTS AAILFAWRLR HIQKTGDLKQ VIMDTGHK
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