Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2117 |
Symbol | |
ID | 5613516 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 2564557 |
End bp | 2565933 |
Gene Length | 1377 bp |
Protein Length | 458 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640933020 |
Product | MATE efflux family protein |
Protein accession | YP_001473854 |
Protein GI | 157375254 |
COG category | [V] Defense mechanisms |
COG ID | [COG0534] Na+-driven multidrug efflux pump |
TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.0110658 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.0465778 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATCAAT TCGGCTTTCA AGCCAAACGT TTAGTGCAAC TTGCACTACC TGTTCTTATC GCCCAAGTCA CACAGACCAT GATGGGCTTC ATTGACACAG TAATGGCTGG TCGAGTTAGT GCAGTGGATA TGGCGGCCGT TGCCGTCGGA ACCAGTCTGT GGCTTCCAGC ACTACTATTT GTACAAGGCC TGTTGATGGC ATTTACGCCG GTTTTTGCTC ACCAACATGG CGCAAATAAC CAGAAAGCGA TTCAACCACT CGCTCATCAA GCTGGATATA TTGCCATAAT AGGCAGTATA GGTGTGATCG TGTTTCTCAC TTTTGCACAA AATATTTTTA CCATGATGGA ATTAGAACCA GAACTCGCCA GATTGAGTAT CGGTTACCTT AATGGGTTCG CTTGGGGGGT GCCCGCCTTC GTGCTTTATC AGGTGCTTCG AGGCTGTAGT GAAGGGATCT CTTATACTTT ACCGACTATG GTTATCGGGT TTGTTGGATT GGCTGTGAAT ATTCCCGCTA ACTATATCTT TATCTATGGA CACTTTGGGA TACCTGCAAT GGGTGGTGCG GGTTGCGGTA TCGCTACCGC TTTGGTTTTT TGGGCAATGT TCATTGCCAT GATTATTTAT ATGCAACTAC ATAAAAAGTT TGCTGAACTG GCACCGTTCA AATCTTTCCA CAAACCAGAT TGGAAAACGA TGTGGGATAT GACCAAGCAT GGGTTTCCAA TTGCGATGGC ACTATTTTTC GAGGTAAGCC TGTTTGCAGT TATCGCGTTG TTACTGGCAC CTCTGGGCGC CAATGTTGTC GCAGGACATC AAATTGCACT TAATTTCTCG TCAATTGTAT TCATGTTACC GCTATCTATT GGTATCGCAG TATCTATTCG TGTCGGTTAT TACCTGGGTC AAGATAAGGC TCATATATCT AAGCTCATAA CGAAAGTTGG ACTCAGCCTC TCATTTACAC TGGCAATTAT TACGGCAATC ATTACGGTCT TGTTCAGAAC TGAAATTGCA TATCTGTATA ATGATAATCC TGAGGTGGTG GCTTTAGCTG GCAGCCTGAT GTTTTTAGCC GCACTTTATC AGCTGTCAGA TTCGGTGCAG GTTGTCGCTG CAGGTGCACT ACGAGGCTAT AAAGACACGC GTAGTGCTCT TTATATTACC CTCGTTTCAT ATTGGGCTAT TGGCATGGTG CTTGGTTATA TACTTGCCAG AACGGATTTG ATTGTACCGC ATATGGGAGC GCACGGCTTT TGGATTGGGT TAATTGCAGG TTTAACCAGT GCGGCAATTC TATTTGCGTG GAGATTACGT CATATCCAAA AAACGGGGGA TTTAAAGCAA GTCATCATGG ATACAGGCCA TAAGTGA
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Protein sequence | MNQFGFQAKR LVQLALPVLI AQVTQTMMGF IDTVMAGRVS AVDMAAVAVG TSLWLPALLF VQGLLMAFTP VFAHQHGANN QKAIQPLAHQ AGYIAIIGSI GVIVFLTFAQ NIFTMMELEP ELARLSIGYL NGFAWGVPAF VLYQVLRGCS EGISYTLPTM VIGFVGLAVN IPANYIFIYG HFGIPAMGGA GCGIATALVF WAMFIAMIIY MQLHKKFAEL APFKSFHKPD WKTMWDMTKH GFPIAMALFF EVSLFAVIAL LLAPLGANVV AGHQIALNFS SIVFMLPLSI GIAVSIRVGY YLGQDKAHIS KLITKVGLSL SFTLAIITAI ITVLFRTEIA YLYNDNPEVV ALAGSLMFLA ALYQLSDSVQ VVAAGALRGY KDTRSALYIT LVSYWAIGMV LGYILARTDL IVPHMGAHGF WIGLIAGLTS AAILFAWRLR HIQKTGDLKQ VIMDTGHK
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