| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2114 |
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| Symbol | |
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| ID | 5609950 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2558973 |
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| End bp | 2560190 |
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| Gene Length | 1218 bp |
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| Protein Length | 405 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640933011 |
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| Product | putative AcnD-accessory protein PrpF |
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| Protein accession | YP_001473851 |
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| Protein GI | 157375251 |
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| COG category | [S] Function unknown |
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| COG ID | [COG2828] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR02334] probable AcnD-accessory protein PrpF |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.343777 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTAGCA AAAAGGTTCA TCCACCTCAA AAGCATCTAC CTCAAATAAA GGTGCCTGCG
ACCTATATGC GCGGCGGCAC CAGTAAAGGT GTGTTTTTTA ACTTAACCGA ACTGCCAAAG
TCCGCACAAA TAGCGGGCAG CGCCCGAGAT GCATTGTTGC TGCGGGTTAT CGGTAGTCCC
GACCCATATG GAAAACAAAC CGACGGCATG GGCGGTGCGA CCTCAAGTAC CAGTAAAACC
GTTATCGTTG CGAAAAGCGC AAAGGCCGAT CACGATGTCG ATTACCTGTT TGGCCAAGTG
GCTATCGATA AGCCATTTGT CGATTGGAGC GGTAACTGCG GTAACTTGTC TGCTGCCGTC
GGCTCTTTCG CCATCAGCAG TGGCTTAGTC GATCCTAGTC GCATACCTGA AAATGGCATT
GTTGTGGTTC GAATTTGGCA GAAGAACATC AGTAAAACCA TTATTGCCCA TGTCCCCATC
ACCAATGGTG AAGTACAGGA AACCGGTGAT TTTGAATTGG ACGGTGTGAC ATTTCCTGCG
GCAGAAGTTG AAGTCGAATT TATGGACCCT GCCGATGGCG AGGGGGCTAT GTTCCCAACG
GGTAACTTAG TCGATGATTT AGTATTACCA ACCGATGTGA TTGCCAGCGG TGTGCTTAAC
GCCACCATGA TCAATGCCGG TATTCCAACT GTGTTCGTCA ACGCGAAAGA TTTAGGCTAC
ACAGGTGCCG AGTTACAAGA GGCCATCAAT GGAGATGTGA AAGCTCTGGC TATGTTTGAA
AGCATTCGTG CACATGGCGC TGTTAAGATG GGCCTGATAA AGCATATTGA TGAAGCGGCA
GGGCGCCAGC ATACACCCAA AGTGGCCATC GTAGCAGAGC CCGTTGATTA CACCTCATCG
AGTGGGAAAT TGATCAATAA AGCCGATATC GACTTAAACG TACGCGCACT CTCTATGGGT
AAACTCCATC ATGCCATGAT GGGAACCGCG GCAGTTGCCA TCGGCACCGC TGCGGCAATA
CCCGGCACAC TGGTGAGCTT GGCGGCGGGT AATATCGAGA GAGAAAGTGT CCACTTTGGC
CATCCTTCGG GCACGTTAAG AGTGGGTGCA CAGGCAAGTC TTGTAAATAG TGAGTGGAGA
GTGAATAAAG CGGTAATGAG CCGCAGCGCA CGAGTGCTGA TGGAAGGCTG GGTGCTTGTC
CCGGCCGATG TGCTCTAA
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| Protein sequence | MTSKKVHPPQ KHLPQIKVPA TYMRGGTSKG VFFNLTELPK SAQIAGSARD ALLLRVIGSP
DPYGKQTDGM GGATSSTSKT VIVAKSAKAD HDVDYLFGQV AIDKPFVDWS GNCGNLSAAV
GSFAISSGLV DPSRIPENGI VVVRIWQKNI SKTIIAHVPI TNGEVQETGD FELDGVTFPA
AEVEVEFMDP ADGEGAMFPT GNLVDDLVLP TDVIASGVLN ATMINAGIPT VFVNAKDLGY
TGAELQEAIN GDVKALAMFE SIRAHGAVKM GLIKHIDEAA GRQHTPKVAI VAEPVDYTSS
SGKLINKADI DLNVRALSMG KLHHAMMGTA AVAIGTAAAI PGTLVSLAAG NIERESVHFG
HPSGTLRVGA QASLVNSEWR VNKAVMSRSA RVLMEGWVLV PADVL
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