| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2113 |
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| Symbol | |
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| ID | 5611812 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2556254 |
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| End bp | 2558860 |
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| Gene Length | 2607 bp |
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| Protein Length | 868 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640933010 |
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| Product | aconitate hydratase |
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| Protein accession | YP_001473850 |
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| Protein GI | 157375250 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1048] Aconitase A |
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| TIGRFAM ID | [TIGR01341] aconitate hydratase 1
[TIGR02333] 2-methylisocitrate dehydratase, Fe/S-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATACCT CATACCGTAA ACCATTACCG GGTACAGATT TAGATTATTA TGATACCCAA
GCCGCCGTCG ATGCCATCAG CCCCGGTGCC TATAGCAAAC TTCCCTATAG CTCTCGTGTA
TATGCCGAAA ACCTGGTACG CCGCTGCGAC CCTGCTAAGC TCACCGATTC GTTAAAGCAG
ATCATCGAAC GTAAGCGAGA CCTCGATTTC CCTTGGTACC CCGCACGCGT GGTTTGCCAC
GATATTTTAG GCCAAACGGC TCTGGTTGAT CTGGCTGGTT TACGTGATGC GATTGCCGAT
AAAGGGGGAG ATCCGTCGAA GGTTAACCCG GTAGTGCCGA CTCAGCTAAT TGTCGATCAT
TCACTGGCTG TTGAGCATGC GGGTTTTGAG AAAGATGCCT TCGAGAAAAA CCGCGCCATT
GAAGACAGAC GAAATGAAGA CCGATTCCAT TTCATCAACT GGACTAAAAC CGCCTTTAAA
AATATCGATG TGATCCAGCC GGGTAACGGC ATCATGCATC AGATTAACCT CGAGAAGATG
TCGCCTGTTG TGCAATCCCG TGATGGCGTC GCTTTCCCCG ATACCTTAGT CGGTACCGAC
AGCCATACGC CCCATGTCGA TGCATTAGGC GTAATCGCAA TCGGCGTCGG TGGACTGGAA
GCCGAAAGCG TAATGCTGGG CCGCCCATCT TATATGCGCC TGCCGGACAT CGTCGGCGTC
GAGCTGGTGG GTAAGCGTCA GAGCGGCATT ACCGCTACCG ATATCGTGCT GGCTATCACT
GAATTCCTGC GTAATGAGAA AGTGGTTTCT ACTTACCTCG AGTTCTTCGG CGAAGGTGCG
GCGAATCTGA CCTTGGGCGA TCGCGCAACG ATCTCAAACA TGACTCCTGA GTTTGGCGCC
ACTGCCGCCA TGTTCTATAT CGATGATAAG ACCATTGATT ACCTGAAACT AACGGGGCGT
GATGACAGCC AGGTTAAGCT CGTCGAAACC TACGCTAAGC AGAGCGGACT TTGGGCCGAC
AGCCTAAAAG ATGCAGAATA TGAGCGTGTA CTGCACTTTG ACCTGTCGGC GGTAGGACGT
AACATTGCCG GGCCATCTAA CCCACATCGC CGCGTATCCA CGAGTGATCT TGCCGAAAAA
GGCATTAGTG GCGTTGTTGA GAATGAAGAG GGCTTAATGC CCGATGGCGC CTGTATTATC
GCTGCGATCA CCAGTTGTAC TAATACCTCT AATCCACGTA ACGTGATTGC CGCGGGCTTG
CTTGCGCGTA ACGCAAATAC AAAAGGACTG ACCCGTAAGC CGTGGGTAAA AACCTCATTA
GCACCGGGAT CTAAAGCGGT TCAGTTGTAT CTTGAAGATG CGAACTTATT GCCTGAGCTT
GAAGCGCTCG GTTTCGGTAT CGTCGGTTTT GCCTGTACCA CCTGTAATGG CATGAGCGGT
GCGTTAGATC CTGTGATTCA AAAAGAGGTG ATCGAACGCG ACCTTTACAC TACAGCAGTA
CTTTCGGGTA ACCGTAACTT CGATGGTCGT ATTCATCCTT ACGCTAAGCA GGCTTTCCTG
GCGTCGCCAC CTTTGGTTGT CGCCTACGCG ATTGCCGGTA CTATTCGATT CGATATCGAG
AAAGACAGCC TGGGAACAGA TAGCGACGGC AATGCGATAA CACTTAAAGA TATCTGGCCA
TCTGATGAAG AGATCGATGC CGTTATCGCG AAGAGCGTGA AGCCAGAGCA GTTCCGAAAA
GTCTATGAGC CGATGTTCGA CATTAAAGTG GAGTATGGCA CCGATAACGA TCCGCAATAC
GATTGGCGTC CACAGAGTAC CTATATTCGT CGCCCTCCAT ATTGGGAAGG CGCGTTAGCA
GGTGAGCGTA CCATGAAGGG GATGCGACCA CTGGCGGTGC TTGGTGATAA CATCACAACC
GATCACCTGT CACCGTCTAA TGCCATCATG CTGGACAGTG CCGCTGGCGC CTATCTGGAT
AAAATGGGCT TACCTGAAGT GGATTTTAAC TCCTATGCAA CGCATCGCGG TGATCACCTG
ACCGCACAGC GCGCTACCTT TGCAAATCCT AAGCTGTTTA ATGAGATGGT GACTCAGCTA
GGTAAGAATG GTGAAGTCGA GGTTAAGCAA GGCTCTTTTG CGCGTATCGA GCCAGAGGGA
CAAGAGTCAC GTATGTGGGA AGCGATTGAG ACCTACATGG AGCGCAAGCA GCCGCTTATC
ATTATTGCGG GTGCCGATTA TGGTCAAGGC TCATCACGGG ATTGGGCGGC CAAGGGCGTT
CGTCTTGCCG GTGTTGAGGT GATTGTCGCC GAAGGGTTCG AGCGAATTCA CCGTACCAAC
CTAGTTGGTA TGGGCGTCTT ACCGCTTGAG TTCACTAATG GTGATAATCG TCATAGCTAT
CAAATCGACG GTACAGAAAC CTATGATGTG TTTGGTGAAC GAACACCTGG CGCGGCATTA
ACTGTGGTGA TGACGCGTAA AAACGGTGAG CATGTTGAAA TAGCGGTTAA GTGTCGCTTA
GATACTGCCG AGGAGGTCTC TATCTATGAG GCTGGCGGTA TCTTGCAGCG CTTCGCTCAG
GACTTCTTAG CGTCGTCTGT TGCATAA
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| Protein sequence | MNTSYRKPLP GTDLDYYDTQ AAVDAISPGA YSKLPYSSRV YAENLVRRCD PAKLTDSLKQ
IIERKRDLDF PWYPARVVCH DILGQTALVD LAGLRDAIAD KGGDPSKVNP VVPTQLIVDH
SLAVEHAGFE KDAFEKNRAI EDRRNEDRFH FINWTKTAFK NIDVIQPGNG IMHQINLEKM
SPVVQSRDGV AFPDTLVGTD SHTPHVDALG VIAIGVGGLE AESVMLGRPS YMRLPDIVGV
ELVGKRQSGI TATDIVLAIT EFLRNEKVVS TYLEFFGEGA ANLTLGDRAT ISNMTPEFGA
TAAMFYIDDK TIDYLKLTGR DDSQVKLVET YAKQSGLWAD SLKDAEYERV LHFDLSAVGR
NIAGPSNPHR RVSTSDLAEK GISGVVENEE GLMPDGACII AAITSCTNTS NPRNVIAAGL
LARNANTKGL TRKPWVKTSL APGSKAVQLY LEDANLLPEL EALGFGIVGF ACTTCNGMSG
ALDPVIQKEV IERDLYTTAV LSGNRNFDGR IHPYAKQAFL ASPPLVVAYA IAGTIRFDIE
KDSLGTDSDG NAITLKDIWP SDEEIDAVIA KSVKPEQFRK VYEPMFDIKV EYGTDNDPQY
DWRPQSTYIR RPPYWEGALA GERTMKGMRP LAVLGDNITT DHLSPSNAIM LDSAAGAYLD
KMGLPEVDFN SYATHRGDHL TAQRATFANP KLFNEMVTQL GKNGEVEVKQ GSFARIEPEG
QESRMWEAIE TYMERKQPLI IIAGADYGQG SSRDWAAKGV RLAGVEVIVA EGFERIHRTN
LVGMGVLPLE FTNGDNRHSY QIDGTETYDV FGERTPGAAL TVVMTRKNGE HVEIAVKCRL
DTAEEVSIYE AGGILQRFAQ DFLASSVA
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