| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2111 |
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| Symbol | prpB |
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| ID | 5611810 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2554047 |
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| End bp | 2554925 |
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| Gene Length | 879 bp |
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| Protein Length | 292 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640933008 |
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| Product | 2-methylisocitrate lyase |
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| Protein accession | YP_001473848 |
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| Protein GI | 157375248 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2513] PEP phosphonomutase and related enzymes |
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| TIGRFAM ID | [TIGR02317] methylisocitrate lyase |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.12913 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGTGCAG GTAAGAAGTT TCGTCAAGCA TTGGCTGACA ATAAACCGTT GCAAATAGTG
GGGACCATCA ACGCTTACTC GGCAATGATG GCAAAGCAGA TTGGCCATCA GGCTATCTAT
CTTTCCGGCG GCGGTGTCGC TAATGCCTCT TATGGTCTGC CGGACTTAGG TATGACATCA
CTCAACGATG TGATTGTCGA TGTGCAGCGC ATCACCTCGG CTTGCGATCT CCCTCTGCTT
GTCGATATCG ATACCGGTTG GGGCGGGGCA TTTAACATTG CCAAGACCGT TCGTGATATG
GAAAAAGCCG GCGCTGCGGC GGTTCATATG GAAGATCAGG TTGCGCAGAA ACGTTGTGGT
CACCGCCCGA ATAAGGAGAT CGTTTCAACG GCAGAGATGG TCGACCGTAT TAAAGCGGCG
GTAGATGCCC GTACCGATCC CGATTTCTTC ATCATGGCAC GTACCGACTC ATTCGCTCAA
GAGGGGCTGG AAGCGGCGAT TGAGCGCGCT AAAGCCTATG TAGCGGCCGG CGCCGACGGT
ATCTTTGCCG AAGCGGTTAA AACAGAGGAG CACTATCGTG CCTTTTCTGA TGCGCTTGAT
GTGCCTATTC TTGCCAACAT CACAGAGTTT GGTCAAACGG AGCTCTGGAA CAAGGAGCAG
CTAGGAGAGT GGGGCGCAGC GATGGTGCTT TATCCATTGA GCGCATTTAG AGCCATGAAT
AAAGCGGCCG AGATGGTATA CACCTCTATA CTCGACAATG GCGACCAAAA AGCAGTGGTC
GATTCGATGC AAACGCGTAT GGACCTATAC AACTACCTGG GATACCACGA ATACGAACAG
AAGCTCGATA GCCTGTTTGC AGAAGGTAAA AATCTCTGA
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| Protein sequence | MSAGKKFRQA LADNKPLQIV GTINAYSAMM AKQIGHQAIY LSGGGVANAS YGLPDLGMTS
LNDVIVDVQR ITSACDLPLL VDIDTGWGGA FNIAKTVRDM EKAGAAAVHM EDQVAQKRCG
HRPNKEIVST AEMVDRIKAA VDARTDPDFF IMARTDSFAQ EGLEAAIERA KAYVAAGADG
IFAEAVKTEE HYRAFSDALD VPILANITEF GQTELWNKEQ LGEWGAAMVL YPLSAFRAMN
KAAEMVYTSI LDNGDQKAVV DSMQTRMDLY NYLGYHEYEQ KLDSLFAEGK NL
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