Gene Ssed_2100 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_2100 
Symbol 
ID5612296 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp2540904 
End bp2542328 
Gene Length1425 bp 
Protein Length474 aa 
Translation table11 
GC content47% 
IMG OID640932997 
Producttetrachloroethene dehalogenase 
Protein accessionYP_001473837 
Protein GI157375237 
COG category[C] Energy production and conversion 
COG ID[COG1600] Uncharacterized Fe-S protein 
TIGRFAM ID[TIGR01409] Tat (twin-arginine translocation) pathway signal sequence
[TIGR02486] reductive dehalogenase 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAGAAC AAGAAAAAGA TGAGCAGGTC ATTGATCAAC ACAGGCGGCA ACTCTTAAAA 
TTAAGTGCAG GGACTATCGC TGGTGTCGGC GCAGTGGCCG GAGCCGGAAG CTGGATAAAA
CACAGAGTCG AAGGCGTCGA GCAGGATGGA TACCCAGTTG AAATTTCTCC ATCTTTTAAA
CGTAAAGATC AACGTGACGT CTTACTGACC TTTGCTGGCA GTAAAGCACT CGGCGAAAAA
CACCCTGAAC GTAACTTGAG CCTAAGTAAT GATGCTGACG GCCCTGCTAA GTCAGGTGAG
AAGTCATTCA ATTTTCAGAA AGGAATTTAT CAATTCGCTA CGGCCCATAC ACGTGCGGAT
AACAATAAGG TCGGCTATAC CCAACTCGAC TATGCCCTGG AGCAAGCTTG CTGGCATGGA
ATGAATATCT TAGCACCGTT GGAATCGATG GGGGTACCCA ACCAAGGCAC ATTTGGCTGG
GATCAATCTG AAGTCAAAAA AGAGAAATAC CCATTTAAAG ACTCGGTTGA GATATTGAGT
GCAATAAAAA CGGCAGCGAA AACATTTGGG GCGGTCAGAG TCGGAATTTG TAAACGTGAT
AAACGCTGGG ACTATGATCC CTTGTATGAT CTTACACAAG AGAAGACACT GACATGGGAG
GAGGATTTTC CCTTCGAACC TAAAAGCGTG ATCGTTATGC TGACCGATAT GGATTACGAT
GCAATGGCAA CGGCACCTAT GATCCCAGCA TCTGCCACTG CCGCTATGGG TTACACCCAG
AATACGATTC AGGGTGGCGG TATGGCCAAG TTTTTAAGAG AGCTTGGATA CATGGCCGTC
GGTTCCGGTA ATGATCTTGG CAGCTCGGTC TCTTATGCTA TTGCAGCAGG ATTGGGTGAA
GGCGCCCGAA ATGGCGCGCT TATTGCACCT AACCTTGGAC CCAGAGTACG AATTTCGAAA
GTTTATACCA ATCTTGAACT CGATGATGCG GCCTACGACA AACCAAGGGA CTTCGGCATT
CTAACCTTTT GCGAAAACTG CAAGAGATGC GCCGAATCAT GCCCGGGTAA TGCCATAAGT
ATGGATGATA AACCTTCAAT GAGTTCAACA TTTGCCGGCA ATGATGACCC TGATTACAAC
TGGCAAGGTC AACCAGGCAT GCGCAAATTC CATAATGACG CCAAGAAATG CTTCAAGTTC
TGGTGTGACA ATGGAGGGGA TTGCGGAGCG TGCATTGCTT CATGTCCATG GAATAAACCT
GATTTCTGGC ACCATAGACT CATTGATGCT TCCAATACCT TCACAGCGGG TCCGGTCCAC
ACCATGATGA AGCAAGCCGA TATTCTGTTT GGTTATGGTA ATACCAATGA TGATAAAGCG
GTTGAAAAAT TCTGGCGTAG TGGTTTTAGT GGCGACTTTA CTTAG
 
Protein sequence
MKEQEKDEQV IDQHRRQLLK LSAGTIAGVG AVAGAGSWIK HRVEGVEQDG YPVEISPSFK 
RKDQRDVLLT FAGSKALGEK HPERNLSLSN DADGPAKSGE KSFNFQKGIY QFATAHTRAD
NNKVGYTQLD YALEQACWHG MNILAPLESM GVPNQGTFGW DQSEVKKEKY PFKDSVEILS
AIKTAAKTFG AVRVGICKRD KRWDYDPLYD LTQEKTLTWE EDFPFEPKSV IVMLTDMDYD
AMATAPMIPA SATAAMGYTQ NTIQGGGMAK FLRELGYMAV GSGNDLGSSV SYAIAAGLGE
GARNGALIAP NLGPRVRISK VYTNLELDDA AYDKPRDFGI LTFCENCKRC AESCPGNAIS
MDDKPSMSST FAGNDDPDYN WQGQPGMRKF HNDAKKCFKF WCDNGGDCGA CIASCPWNKP
DFWHHRLIDA SNTFTAGPVH TMMKQADILF GYGNTNDDKA VEKFWRSGFS GDFT