Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2100 |
Symbol | |
ID | 5612296 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 2540904 |
End bp | 2542328 |
Gene Length | 1425 bp |
Protein Length | 474 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640932997 |
Product | tetrachloroethene dehalogenase |
Protein accession | YP_001473837 |
Protein GI | 157375237 |
COG category | [C] Energy production and conversion |
COG ID | [COG1600] Uncharacterized Fe-S protein |
TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence [TIGR02486] reductive dehalogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAGAAC AAGAAAAAGA TGAGCAGGTC ATTGATCAAC ACAGGCGGCA ACTCTTAAAA TTAAGTGCAG GGACTATCGC TGGTGTCGGC GCAGTGGCCG GAGCCGGAAG CTGGATAAAA CACAGAGTCG AAGGCGTCGA GCAGGATGGA TACCCAGTTG AAATTTCTCC ATCTTTTAAA CGTAAAGATC AACGTGACGT CTTACTGACC TTTGCTGGCA GTAAAGCACT CGGCGAAAAA CACCCTGAAC GTAACTTGAG CCTAAGTAAT GATGCTGACG GCCCTGCTAA GTCAGGTGAG AAGTCATTCA ATTTTCAGAA AGGAATTTAT CAATTCGCTA CGGCCCATAC ACGTGCGGAT AACAATAAGG TCGGCTATAC CCAACTCGAC TATGCCCTGG AGCAAGCTTG CTGGCATGGA ATGAATATCT TAGCACCGTT GGAATCGATG GGGGTACCCA ACCAAGGCAC ATTTGGCTGG GATCAATCTG AAGTCAAAAA AGAGAAATAC CCATTTAAAG ACTCGGTTGA GATATTGAGT GCAATAAAAA CGGCAGCGAA AACATTTGGG GCGGTCAGAG TCGGAATTTG TAAACGTGAT AAACGCTGGG ACTATGATCC CTTGTATGAT CTTACACAAG AGAAGACACT GACATGGGAG GAGGATTTTC CCTTCGAACC TAAAAGCGTG ATCGTTATGC TGACCGATAT GGATTACGAT GCAATGGCAA CGGCACCTAT GATCCCAGCA TCTGCCACTG CCGCTATGGG TTACACCCAG AATACGATTC AGGGTGGCGG TATGGCCAAG TTTTTAAGAG AGCTTGGATA CATGGCCGTC GGTTCCGGTA ATGATCTTGG CAGCTCGGTC TCTTATGCTA TTGCAGCAGG ATTGGGTGAA GGCGCCCGAA ATGGCGCGCT TATTGCACCT AACCTTGGAC CCAGAGTACG AATTTCGAAA GTTTATACCA ATCTTGAACT CGATGATGCG GCCTACGACA AACCAAGGGA CTTCGGCATT CTAACCTTTT GCGAAAACTG CAAGAGATGC GCCGAATCAT GCCCGGGTAA TGCCATAAGT ATGGATGATA AACCTTCAAT GAGTTCAACA TTTGCCGGCA ATGATGACCC TGATTACAAC TGGCAAGGTC AACCAGGCAT GCGCAAATTC CATAATGACG CCAAGAAATG CTTCAAGTTC TGGTGTGACA ATGGAGGGGA TTGCGGAGCG TGCATTGCTT CATGTCCATG GAATAAACCT GATTTCTGGC ACCATAGACT CATTGATGCT TCCAATACCT TCACAGCGGG TCCGGTCCAC ACCATGATGA AGCAAGCCGA TATTCTGTTT GGTTATGGTA ATACCAATGA TGATAAAGCG GTTGAAAAAT TCTGGCGTAG TGGTTTTAGT GGCGACTTTA CTTAG
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Protein sequence | MKEQEKDEQV IDQHRRQLLK LSAGTIAGVG AVAGAGSWIK HRVEGVEQDG YPVEISPSFK RKDQRDVLLT FAGSKALGEK HPERNLSLSN DADGPAKSGE KSFNFQKGIY QFATAHTRAD NNKVGYTQLD YALEQACWHG MNILAPLESM GVPNQGTFGW DQSEVKKEKY PFKDSVEILS AIKTAAKTFG AVRVGICKRD KRWDYDPLYD LTQEKTLTWE EDFPFEPKSV IVMLTDMDYD AMATAPMIPA SATAAMGYTQ NTIQGGGMAK FLRELGYMAV GSGNDLGSSV SYAIAAGLGE GARNGALIAP NLGPRVRISK VYTNLELDDA AYDKPRDFGI LTFCENCKRC AESCPGNAIS MDDKPSMSST FAGNDDPDYN WQGQPGMRKF HNDAKKCFKF WCDNGGDCGA CIASCPWNKP DFWHHRLIDA SNTFTAGPVH TMMKQADILF GYGNTNDDKA VEKFWRSGFS GDFT
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