| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2088 |
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| Symbol | |
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| ID | 5610465 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2529218 |
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| End bp | 2530585 |
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| Gene Length | 1368 bp |
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| Protein Length | 455 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640932985 |
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| Product | uroporphyrinogen-III methylase-like protein |
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| Protein accession | YP_001473825 |
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| Protein GI | 157375225 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0007] Uroporphyrinogen-III methylase |
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| TIGRFAM ID | [TIGR01469] uroporphyrin-III C-methyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATCCAG GAAAAGTGTT TCTGGTTGGA GCTGGCCCGG GAGATCCCGG TCTTCTGACC
TGGCGTGCGA TAAAGTTGAT GTCCTCCTGT GATGTGGTCT GTTATGACCT GCTTGTCAGT
CCGGCTATTC TATCTTTGGT GCCAGCCGAA AAGGAGATGA TGCCCGTGGG CTACCGTGGG
TATTGTGGCA GCAGCATCGA GTATGGCATG CACCCGGATG TCGTTGCCGA GGCTTTGGCG
GGTAAGACGG TATTGCGCCT TAAGTCCGGC GATCCCTTTA TCTTCGGGCG AGCTACCGAA
GAGTGTCGTA GTCTGAGTCA TCACGGTATC GATTATGAGA TAGTTCCCGG GATCACTTCC
GCCTTGGGGG CAGCCGCCTA TGCAGGGTTC CCGTTGACCA GCAATGGTAT GGCATCGGAT
GTGACGTTCG TGAGTGGTCA CAGGCCCTCT AAAACTCTGA CCAGTTGGGC CTCTATGGGC
AAGAGCTCCG GCACCTTAGT GCTGTATATG GGGGCTAAGA AGTTGGCTCT TCATGCGGCG
AAGTTGATTG CCGAAGGACG CGATCCGGAC ACGCCGGTGG CGCTGGTCTC ATCGGCAACC
AGCTATAAAC AGAAGTTACT CACCACGACC TTAGGTAAGG TCGATGAGGT GATGGATGCC
GATATTCACA GCGACGGCAG TCCTGTATTG GTGATCATGG GCCAGGTGGT CGAGCTCTCA
TCGGAGCTGG ATTGGCGCAG CAAGTTACTT TTGGCCGGGC GTTCGGTGAT GGTACCAAGT
CAACACGAAG AGATGGCTGA AACCTTGCGC GTTATCGGCG CCGAGGTGAT AAGGGGGCCG
GGAGTCGAGA TGGAATGCGG CTTTAATCCC TTCGATTGGA ATCGCATTAT GGCATCCACG
ACACTCTGGC TTGCCGATGA AGATGCAGCC AAGGCTCTGA TGGCCACGGC AGGGGAGCAT
AAGATGGATA TCCGCCTCTG GCCATGGCAA ATATCGGGTA AGCGATCCGC TCAGTGTTAT
TTGGCCCGCT ACGGCATTTT TATCGATGAA AATGAAGAGG CACCTGGCTC CTCATTGTCC
TTAGTATCCA GTGAACAGGA TGCCGGATTA TGTGGCTGTC AGCTGAACGT CACGGCGCCC
AAATTTTCTA TGGGGCAGCT GGATATCTGT TGGGTGGATG ATAGTGCCGT CATGGAGATG
ATTTTAGCGC GGCCCGATCT CTTTAACTGG CGATATCTGG TGACGACAAG GCCTGAGCTT
GCGCAAGTGT TGCGCCAACA AGGGATAGCG CATCATCTGG TGGCATTCGA TGATATCGGC
CAGCAGTTGT CTATGTTGAC GGTGGAGCAG AACCGCCATG TGGCCTGA
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| Protein sequence | MNPGKVFLVG AGPGDPGLLT WRAIKLMSSC DVVCYDLLVS PAILSLVPAE KEMMPVGYRG
YCGSSIEYGM HPDVVAEALA GKTVLRLKSG DPFIFGRATE ECRSLSHHGI DYEIVPGITS
ALGAAAYAGF PLTSNGMASD VTFVSGHRPS KTLTSWASMG KSSGTLVLYM GAKKLALHAA
KLIAEGRDPD TPVALVSSAT SYKQKLLTTT LGKVDEVMDA DIHSDGSPVL VIMGQVVELS
SELDWRSKLL LAGRSVMVPS QHEEMAETLR VIGAEVIRGP GVEMECGFNP FDWNRIMAST
TLWLADEDAA KALMATAGEH KMDIRLWPWQ ISGKRSAQCY LARYGIFIDE NEEAPGSSLS
LVSSEQDAGL CGCQLNVTAP KFSMGQLDIC WVDDSAVMEM ILARPDLFNW RYLVTTRPEL
AQVLRQQGIA HHLVAFDDIG QQLSMLTVEQ NRHVA
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