| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2084 |
|---|
| Symbol | |
|---|
| ID | 5610450 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 2525139 |
|---|
| End bp | 2526665 |
|---|
| Gene Length | 1527 bp |
|---|
| Protein Length | 508 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 640932981 |
|---|
| Product | cobalamin biosynthesis protein CbiG-like protein |
|---|
| Protein accession | YP_001473821 |
|---|
| Protein GI | 157375221 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG2073] Cobalamin biosynthesis protein CbiG |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGTTG CGGTACATGC CATTACTAAA AATGGCGTAG CGCTTGCCCG TCAGCTGGCT
GAAGTGATGC CGGAGGTAGA GCTCTTTATC GGCGACCAAT TTGCGATAGA GGACTCTGAG
ACCGGGTTCA GCCTGCCGTT GTCAGCTCAC TTTGACCGAC AATTTCACCG CTATAGCCAT
CATATTTGCC TGTTTAGTGT CGGTATCGCC GCCAGGAGCA TTGCTCCTCG TCTGGTCGAC
AAACGCACCG ATCCGGCCGT CGTCTGCGTC GATGAGCGGG GGCTTCACGC GGTTGCATTT
TGTGGAGGCC ACCGCGGCGG TGCTAACGTG CTAAGCGAGC GCGTGGCATA TCTCTTAGGT
GGTGAGTCGG TTGTCACAAC TGCATCAGAT TGTGCGCAGA CCCTATCGGC AGACATGATG
GGAGCGCATC TTGGTTGGAC CCTGGACCCG AGTTACGAGA AATCGATTAC TTCAGTCAGT
GCGGCCATCG TCAACGCTAA ACCCGTCCTT ATCTGTCAGC TGAGCGGTGA ACGCAGCTGG
TGGAGGCAGG CGCGGCCTTT ACCCGAGCAT CTGGAACTGA CCGAAGATCC GCAGCGCCTG
CAACAAGAAG ATGTGAAGGC TGGGATCCTT ATCTCTGACA AGACTGATCT TGAGCCAAAG
TTAGCCGATA GTGCCGAGCT GGCGCTGGTG GTATGGCGTC CCAGGTCGCT GTTTATCGGT
ATTGGCTGTG ATCGCAACAC CCCACAAAGC GTGATTGAAC GAGGCCTGGC CAAATTTATG
GCTGACAACT CGCTTGCGAT CGATGCTATC GCCGAACTGG CCTCTATCGA TCTGAAAGCT
GATGAAGCCG GGATAATTGC AGCGGCGAAT CGATTAAATC GTCCCTTCAA TACCTTTAAT
CCACAGACAC TTGAGAAGGT GGTGGGGGTT GAGACCCCGT CTGAAACTGT TAAGCGATGT
ATCGGTGTAT CTTCGGTTGC TGAGGCGGCG TGCCTGCATG CATCCGGGCG AAGCGAGCTC
TTGATCCCTA AGAGTAAGTT TAAATTCGAT GGCTTCAATA TGACCTTAGC CGCCTGCCGC
CGTGACTTCC CGCTGTCGCA ATCTCATCAA GCTGACAAGC TCCATTCCAG CCACAAACCC
ATGAAGGCCT GTCCTAATCG CCCCATAAAA CACTATCTGT ATCATCTGAT TGTGTGTGAA
GGGGGGCGCT GCGATGTGCC AGGCCAGACG GGGTTAGCTC ATCACCTTCG TACCTTATTA
AAGCAGTTTG GATTCGCGAG GGGAGCCGAA CGAATAAAGG TGAGCCGTAG TCACTGTTTG
GGTTGTTGTC GCAAGCTGGT TCCTATGGTG ATTTATCAAG GCAAGAGTCA GACAGAGCTG
AGTGTAAATC ATGCCTTATG GCTGCAAAAA GTCGACAAGC TAACGGATGA ACAGTGGAAA
GAGGTGTTTC AGGCATTAGT CACAAACATG CCTCTAAAAA CATTGTTGCC GAGCCAATAC
CTGAGTGAGC AAGAGGTGGC AGCATGA
|
|---|
| Protein sequence | MSVAVHAITK NGVALARQLA EVMPEVELFI GDQFAIEDSE TGFSLPLSAH FDRQFHRYSH
HICLFSVGIA ARSIAPRLVD KRTDPAVVCV DERGLHAVAF CGGHRGGANV LSERVAYLLG
GESVVTTASD CAQTLSADMM GAHLGWTLDP SYEKSITSVS AAIVNAKPVL ICQLSGERSW
WRQARPLPEH LELTEDPQRL QQEDVKAGIL ISDKTDLEPK LADSAELALV VWRPRSLFIG
IGCDRNTPQS VIERGLAKFM ADNSLAIDAI AELASIDLKA DEAGIIAAAN RLNRPFNTFN
PQTLEKVVGV ETPSETVKRC IGVSSVAEAA CLHASGRSEL LIPKSKFKFD GFNMTLAACR
RDFPLSQSHQ ADKLHSSHKP MKACPNRPIK HYLYHLIVCE GGRCDVPGQT GLAHHLRTLL
KQFGFARGAE RIKVSRSHCL GCCRKLVPMV IYQGKSQTEL SVNHALWLQK VDKLTDEQWK
EVFQALVTNM PLKTLLPSQY LSEQEVAA
|
|---|
| |