Gene Ssed_2082 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_2082 
Symbol 
ID5611288 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp2523128 
End bp2524384 
Gene Length1257 bp 
Protein Length418 aa 
Translation table11 
GC content50% 
IMG OID640932979 
Productprecorrin-6Y C(5,15)-methyltransferase (decarboxylating) 
Protein accessionYP_001473819 
Protein GI157375219 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG2241] Precorrin-6B methylase 1
[COG2242] Precorrin-6B methylase 2 
TIGRFAM ID[TIGR01444] methyltransferase, FkbM family
[TIGR02467] precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit
[TIGR02469] precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGGGCA GTATTACCTT AATTGGAATC GGCGATGATG GTTGCGTTAG TTTAACCAGT 
CGCGCCATTA ACGCGGTAGC TCAAACAGAG TTACTGGCCG GCGCCACACG TCATCTTGAG
TTCTTCCCTC AGTTCTGTGG TGAAAAATTA TCGTTTGTCA GTGGCCTCAA TGGATACCTT
ACTCAAATCG TAGAGGCGGC AAAAGATAAA GATATCTGCG TGCTAGCCTC CGGAGACCCC
CTGTTTTTCG GGATAGGTAA ACGGCTACTT GCCATGGTTG CAGCTGTAGA TGCCGCGATA
AATGTAGAGG TGATCACCTC GCCCAGCAGT GTGCAACTGG CCTGCGCCAA AGCCTTGATC
CCATCGGATA ACGTCAAGGT TATCTCTCTG CATGGCCGCG CTATTACGGG GATGGTAGCC
CGCATGCAGC AGGGAGATCA TTTTGCGCTG CTTACCGACA ATGATCACAA TCCAGTGGCC
ATAGCCAGAC ATCTGCTTAG CTATGATGAA ACCCTCTGGC GTCTGGTTCT GTGTGAGCAC
CTGGGAGGCA GTAAAGAGCG TATCAGGGAG TTCACTGTCC AGGAGTTAGC CGCGACATCT
ACAGATGATA TTGAGTCTCT CAACGTATTA CTCCTGCAGC GTCAGGGGCA AGCGTATTGG
GGGGGCTTGG CAACGCATTG CCCGGATAGT GCTTATCAGG TGCTTACCCC ATTAAATGGT
TTGATAACTA AGGCAATTAC TCGTGCGCTA GTTGTGGCGC GTTTAGGGTT AACCCCCTGC
AGCGTTGTCT GGGATATAGG TTCAGGCTCA GGCTCCATCG CCATAGAAGC AGCGAAGCAG
GCCTGGAATG GCCATGTCTA TGCCCTGGAA TGTAACCCCC AATGTTTCGA CGTGATCGGG
CAAAACCAGA AGCGTCACAG AGTCGATAAT CTCACACTAG TTAAGAGTAA GGCGCCTTTA
GGGTTAGATG AATTACCCGC CCCAGATGCC GTATTTGTCG GCGGCAGTCG CGGGCAGATT
GACGCCATAG TCGAACATGC CATGAGTCGA CTGAGCATTG GCGGAAAATT GATCCTCTCT
GCCATCACTT TAGACAGCGT CAGCGAGTTC TTTCAACTAT GTAAATCGAA GCAATATCAG
TATGAAGTCA TGATGTTGCA AAGTTCAGTC TCGCAGCCAT TAGCGCATTA CCAGCGTTAT
CAGGCTGAAA ATCCTATTCA CCTGTTTGTG ATCACTAAAG AAGGCAATAA CACATGA
 
Protein sequence
MTGSITLIGI GDDGCVSLTS RAINAVAQTE LLAGATRHLE FFPQFCGEKL SFVSGLNGYL 
TQIVEAAKDK DICVLASGDP LFFGIGKRLL AMVAAVDAAI NVEVITSPSS VQLACAKALI
PSDNVKVISL HGRAITGMVA RMQQGDHFAL LTDNDHNPVA IARHLLSYDE TLWRLVLCEH
LGGSKERIRE FTVQELAATS TDDIESLNVL LLQRQGQAYW GGLATHCPDS AYQVLTPLNG
LITKAITRAL VVARLGLTPC SVVWDIGSGS GSIAIEAAKQ AWNGHVYALE CNPQCFDVIG
QNQKRHRVDN LTLVKSKAPL GLDELPAPDA VFVGGSRGQI DAIVEHAMSR LSIGGKLILS
AITLDSVSEF FQLCKSKQYQ YEVMMLQSSV SQPLAHYQRY QAENPIHLFV ITKEGNNT