| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2080 |
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| Symbol | |
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| ID | 5611286 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2521360 |
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| End bp | 2522475 |
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| Gene Length | 1116 bp |
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| Protein Length | 371 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640932977 |
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| Product | cobalamin biosynthesis protein |
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| Protein accession | YP_001473817 |
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| Protein GI | 157375217 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG1903] Cobalamin biosynthesis protein CbiD |
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| TIGRFAM ID | [TIGR00312] cobalamin biosynthesis protein CbiD |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGACGGTAA CTAAAATTCG TCGTAGTCAG CATGGCAGTG AGCTTCGAAA GGGCTATACC
ACCGGCGCCT GCGCAACTGC TGCAGCGTTG GGAGCCTTAA CGCGATTATT CGATCCCACT
TCAGCTGCCG AGGTTTCTAT CCTGTTACCT ATTGGTGAGC GGGCTAAATT CAGGTTATTG
CATCACCAGG CGGGGAAGGA CTTTGCCACA GCCGGCGTGG TCAAAGATGC CGGCGACGAT
CCCGATTGTA CCCATGGTGC AGAAATTATT GCCAGAGTCT GTGTCAGCCA TAGACCCGGC
GTGCGTTTCA TTGCAGGGCC TGGGGTTGCA ACCATCACCT TAGCGGGCCT GGAACTCGGT
GTCGGAGAGC CTGCCATCAA CCCAATCCCA CGGCAGATGA TCGAATCACA CCTGATTCCC
TTACTTATTC ATCACGGCTT CAGTGGGGCC GACGTCACCA TAAGTGTACC CGGTGGAGAA
GCGCTCGCGA AACAGACAAT AGGTGAGAGG CTGGGCTTGA AAGGTGGTAT TTCGATTTTG
GGTACCCGAG GCACGGTTCA TCCCTATTCG ACCTCTGCCT ACGCCGCCTC GGTGCGACAG
GGAGTTCAAG TTGCAGCCAA TCAGAACCTG AGACATATGG TGTTAACGAC AGGAAGTCGC
ACCGAGAAGC AGGCGATGAT TATTCACTCA GAACTGCCGC AAACATCATT TATCCAGGCG
GGTGATTTTA TCGGCGTGGG ACTGCGTGCC AGTGCCAAAT ATGCCATGAA CCGCGTCGAG
TTAGTGGTGA TGATTGGCAA GCTTTGTAAA TTAGCCTGCG GAACCATGAT GACCCACGTC
ACGGGCAGGC AGGTCGATTT TGAAAGGCTG GGCGGTTTAC TGACTACGCA TTGTGATGAC
TCATCTTTAT TACGGTCGGT AACGCAGGCT CGTACAGGGC GCCAGCTTCT GTCCATCGTC
GAGCACCAAG AGTTCAGACA AGCTTTCCTG ACAGACATCT GTCAGCAAGC CGCAATTCAC
AGTTTCAATT ATGCCCATAA AAAATTAGCC GTATCTGTAC GTCTTATAGA TTTTGACGGC
GCGACATTAG CTCAGGCTAC ACACGGAGAC TACTGA
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| Protein sequence | MTVTKIRRSQ HGSELRKGYT TGACATAAAL GALTRLFDPT SAAEVSILLP IGERAKFRLL
HHQAGKDFAT AGVVKDAGDD PDCTHGAEII ARVCVSHRPG VRFIAGPGVA TITLAGLELG
VGEPAINPIP RQMIESHLIP LLIHHGFSGA DVTISVPGGE ALAKQTIGER LGLKGGISIL
GTRGTVHPYS TSAYAASVRQ GVQVAANQNL RHMVLTTGSR TEKQAMIIHS ELPQTSFIQA
GDFIGVGLRA SAKYAMNRVE LVVMIGKLCK LACGTMMTHV TGRQVDFERL GGLLTTHCDD
SSLLRSVTQA RTGRQLLSIV EHQEFRQAFL TDICQQAAIH SFNYAHKKLA VSVRLIDFDG
ATLAQATHGD Y
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