| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2079 |
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| Symbol | |
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| ID | 5610516 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2519819 |
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| End bp | 2520760 |
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| Gene Length | 942 bp |
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| Protein Length | 313 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640932976 |
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| Product | lipid kinase |
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| Protein accession | YP_001473816 |
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| Protein GI | 157375216 |
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| COG category | [I] Lipid transport and metabolism
[R] General function prediction only |
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| COG ID | [COG1597] Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase |
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| TIGRFAM ID | [TIGR00147] lipid kinase, YegS/Rv2252/BmrU family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.957871 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAATGT TGATCTTGAA CGGTAAGAAA GCCGGCCTTG CAGAGATCCG CCAATCTGTT
TATCAGTTAC GTTCACTGGG ACACGATCTC TTAGTGCGCT GTACCTGGGA AGAGGGTGAT
GTCGCCAGGT TCGTCGATGA AGCGATAAAC CTGAATGTGA CTCGTATCAT TGCCGGAGGC
GGTGACGGTA CGGTCAATGA GTTAGCCGAT ACACTCGCTA AACGTTCCAG GCGATTCGAC
AACGCCAACT CAGAGGACGT TCTACTTCCA GAAATAGCGA TACTGCCTCT GGGGACCGCC
AATGATTTTG CTACGGCGTG CGGGATCCCA ACTCAAATTG ATGCGGCACT GGAACTGGCT
GTTAATGGCA CGGCTCAGAG TATCGATCTG GCTATGGCCA ACGGCAGGTA TTTCATCAAC
GTCGCCTCGG CAGGCTTTGG TGCACAGATA ACTGTTGAAA CCCCTGTCGA GTTAAAAAAC
TTGTTAGGCG GACAAGCCTA TTTCATCTCA GGTTTACTCC AGGCAATGAA GTTCACCCCT
TACGAGGGAA AAGTCACCGC CAGGGGAGTG GATGGAAACT TGCTCTCTGT GCAGGGAGCA
GGCTTGATGG GAGCGATTTG TAACGGTCGT ATGGCCGGCG GCGGGCAGCA GCTAGCCCCT
CATGCCTATC TCAATGATGG TCTGCTGGAT GTATTACTGC TTGAGCACTT CCCGCCAACC
GCGCTGAAAC AGGTTGTCGA TGAGTTATTG GACCCGACCC TGGATGGTGA GTATGTACAA
CGTTTTCAGG CAACGGAAGT GGAGATACAA TCGACACAGC CTCTTCCCGT CAATCTGGAC
GGTGAACCTA CCAGTGATAT AAAACACAAA TTTTCTATTC TGCCGGCGGC GATAAAGCTT
GTCTTACCCG ATGACACTCC AATCTTAATG ACAAGCGTAT AG
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| Protein sequence | MKMLILNGKK AGLAEIRQSV YQLRSLGHDL LVRCTWEEGD VARFVDEAIN LNVTRIIAGG
GDGTVNELAD TLAKRSRRFD NANSEDVLLP EIAILPLGTA NDFATACGIP TQIDAALELA
VNGTAQSIDL AMANGRYFIN VASAGFGAQI TVETPVELKN LLGGQAYFIS GLLQAMKFTP
YEGKVTARGV DGNLLSVQGA GLMGAICNGR MAGGGQQLAP HAYLNDGLLD VLLLEHFPPT
ALKQVVDELL DPTLDGEYVQ RFQATEVEIQ STQPLPVNLD GEPTSDIKHK FSILPAAIKL
VLPDDTPILM TSV
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