| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2077 |
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| Symbol | |
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| ID | 5610514 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2515587 |
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| End bp | 2516618 |
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| Gene Length | 1032 bp |
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| Protein Length | 343 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640932974 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001473814 |
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| Protein GI | 157375214 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.984314 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.163131 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACTTAG CTAAACATCT CTCAGATACT GAAGTATCGG CAAAAATTCT CAGGCATGCG
GTGCCTAAGA TGTCTGAACA CAATATTCCC GTAACACCAG ATAATTACGC CGTATGGTAT
GAATATTACC TTGGAATTAA TCTGGACTTG AAGCGGGCGA TAGACGGTTT GATCTCAAAC
GGCATCTCCT TTAGCACAGA GGTTAATGCA GGGTTATATA AGAATTTTAT TCAAGAGCAG
TCGTCTGAAA TTATTGAAAA TGTTCAGATT GAAACTCAGA TCCTGATTAA TAATCTATTG
ACGAAAATCA GTCAGATGAA CAGCGGCACC GCCAGTTTGA ATGATACTCT TTCCGAATTT
CATCAAGATC TAAAACAGAG CCCTGACGCC GATGTGTTAC AGAAACTTGT CGATAGCCTG
GTCGATGAGA TGGACAATGT CATTAGCAGT AACAAGCAGA TGGAGGCGAG CCTTAATGCG
ATGAGCAGTG AGGTAAACTC ATTGAAATCT GAGATGGAAA GCCTCAATGT CCTGGCTCTG
ACAGATCAAC TGACCTCTTT ACATAATCGT CGTGCTTTCG AAGAGGAAGT GCTGATACAC
ATGCAGCGTT TAACCAAGAC TCAAGAATCC AGCTGTTTAT TGGTCATCGA TATCGATCAC
TTTAAGCAGT TCAATGATAA TCATGGTCAT GTTATTGGTG ATAAGGTGTT GACGTATATC
GCCTTAGCCT TAAATCAAGC TGTTAAGGGA AGCGACTTCG TAGCCAGATA CGGGGGGGAA
GAGTTTGTTG TTCTGCTCCC CGATACTGAA TTGGCCGATG CCTTGATCGT TGCCGAGCAG
TTGCGCAGTA AAATTGCCGA TCGAAAATTG ACGGTAGGAA AAGATAAAAA GCTCTCCTTA
GGCTCGATTA CTGTGTCTAT AGGCGCAGCG ACGCTTAATA TCAGTGATGA CAGAGAGAGT
TACTTTGTCA GAGCCGACGA AGCCCTGTAC CGTGCTAAAT CATGCGGTAG AAACTGTGTA
AGAAGTGAGT AG
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| Protein sequence | MNLAKHLSDT EVSAKILRHA VPKMSEHNIP VTPDNYAVWY EYYLGINLDL KRAIDGLISN
GISFSTEVNA GLYKNFIQEQ SSEIIENVQI ETQILINNLL TKISQMNSGT ASLNDTLSEF
HQDLKQSPDA DVLQKLVDSL VDEMDNVISS NKQMEASLNA MSSEVNSLKS EMESLNVLAL
TDQLTSLHNR RAFEEEVLIH MQRLTKTQES SCLLVIDIDH FKQFNDNHGH VIGDKVLTYI
ALALNQAVKG SDFVARYGGE EFVVLLPDTE LADALIVAEQ LRSKIADRKL TVGKDKKLSL
GSITVSIGAA TLNISDDRES YFVRADEALY RAKSCGRNCV RSE
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