| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2072 |
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| Symbol | |
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| ID | 5611542 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2510219 |
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| End bp | 2512045 |
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| Gene Length | 1827 bp |
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| Protein Length | 608 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640932969 |
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| Product | phosphogluconate dehydratase |
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| Protein accession | YP_001473809 |
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| Protein GI | 157375209 |
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| COG category | [E] Amino acid transport and metabolism
[G] Carbohydrate transport and metabolism |
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| COG ID | [COG0129] Dihydroxyacid dehydratase/phosphogluconate dehydratase |
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| TIGRFAM ID | [TIGR01196] 6-phosphogluconate dehydratase |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.013535 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.010914 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCACGCAG TCGTACAATC TGTTACCGAC AGAATTATCG CTCGCAGTAA AGAAACTCGG
GCTAAATACC TGGCCGCACT CGATGAGGCT AAGCTTAATG GGGTACACCG TAGTTCACTG
AGTTGCGGAA ATTTGGCCCA TGGTTTCGCA GCCTGTCAGC CCGATGATAA ACAGTCGATT
AAAGCACTGA CTAAAGCCAA TATTGGCATT GTGACGTCAT TCAATGACAT GCTGTCGGCT
CATCAACCTT ATGAAGCTTA TCCTGCACTG CTTAAGCAGG CTTGCGCCGA AGTGGGAAGT
GTCGCTCAGG TTGCCGGTGG CGTTCCCGCA ATGTGTGATG GCGTGACACA AGGTCAGCCA
GGCATGGAGC TCAGCCTGTT AAGTCGTGAA GTTATCGCCA TGTCTACGGC GGTGGGCTTA
TCTCATAACA TGTTTGATGG TGCCTTGTTA CTGGGGATCT GTGACAAGAT CGTCCCAGGC
CTATTGATTG GCGCCTTAAG TTTTGGTCAT CTTCCGATGT TGTTTGTTCC TGCGGGCCCG
ATGAAATCAG GGATCCCGAA TAAGGAAAAG GCTAGGATCA GACAGCAATT TGCGCAAGGT
AAGATCGATC GTAAAGCCCT GCTCGAAGCT GAATCTCAGT CTTACCACAG CGCCGGAACT
TGTACTTTCT ATGGGACAGC TAACAGCAAC CAGCTAATGC TGGAAGTGAT GGGACTGCAA
CTGCCTGGTT CATCCTTTGT TAATCCTGAT GATCCGCTCA GAGAAGTACT CAATAAAACT
GCCGCTAAAC AGGTTTGTCG TTTAACCGAG ATGGGCACCC AATATACGCC TATCGGTGAA
CTGGTTAACG AAAAGTCGAT TGTAAACGGT ATCGTGGCAT TGCTTGCGAC CGGTGGTTCT
ACAAATCTCA CTATGCATAT TGTTGCCGCT GCTCGCGCTG CAGGCGTGAT TGTCAATTGG
GATGATTTCT CTGAGTTATC AGATGCTGTG CCATTACTGG CTCGGGTTTA TCCTAATGGA
CATGCCGATA TCAACCATTT CCATGCCGCA GGCGGGATGG CGTTTTTGGT CAAAGAACTG
CTTGATGGTG GGCTGCTACA TGAAGATGTC AACACTGTCG CGGGCTACGG ATTGAGACGT
TATACCCAAG AGCCAAGATT AATTGATGGC GAAATCAAAT GGGTCGACGG TCTGGGCGAA
AGTCTGGACA GTGAAGTGTT GACTAAAGTT GAGACTCCAT TTCAGGCGAA CGGGGGTCTC
AAGTTACTTA AAGGTAACTT AGGCCGTGCA GTGATCAAAG TGTCAGCGGT TCAAGAGGCT
CATCGTTTTG TCGAAGCCCC AGCGGTTGTC ATCGACGATC AAAATAAGCT TGAGGCTATC
TTCCAAGCCG GTGATTTAGA AAAAGATTGT GTCGTTGTGG TCAAGGGCCA AGGTCCGAAA
GCCATTGGTA TGCCGGAACT GCATAAGCTC ACCCCTATTT TGGGAACCCT GCAAGACCGC
GGTTTCAAGG TCGCGCTTTT AACCGACGGA CGTATGTCTG GTGCGTCAGG AAAGGTCCCT
GCGGCTATCC ATCTGACGCC GGAAGCGCTG GACGGTGGTT TAATCGCTAA GGTTCAAAAT
GGTGATTTAA TCAGAGTCGA TGCCTTAACC GGTGAGCTGA CATTGTTAGT CGCCGATGAA
GAAATTGCAG CACGAGAAGC TGAGAAAGTA GACCTGAGAA GTACGAGTTA TGGAATGGGT
CGAGAGTTGT TTGGCGCATT AAGATCAAAC TTAAGTAGTC CGGAAACTGG TGCACGCTGC
ACCAGCGCTA TCGATGAAAA CTATTAA
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| Protein sequence | MHAVVQSVTD RIIARSKETR AKYLAALDEA KLNGVHRSSL SCGNLAHGFA ACQPDDKQSI
KALTKANIGI VTSFNDMLSA HQPYEAYPAL LKQACAEVGS VAQVAGGVPA MCDGVTQGQP
GMELSLLSRE VIAMSTAVGL SHNMFDGALL LGICDKIVPG LLIGALSFGH LPMLFVPAGP
MKSGIPNKEK ARIRQQFAQG KIDRKALLEA ESQSYHSAGT CTFYGTANSN QLMLEVMGLQ
LPGSSFVNPD DPLREVLNKT AAKQVCRLTE MGTQYTPIGE LVNEKSIVNG IVALLATGGS
TNLTMHIVAA ARAAGVIVNW DDFSELSDAV PLLARVYPNG HADINHFHAA GGMAFLVKEL
LDGGLLHEDV NTVAGYGLRR YTQEPRLIDG EIKWVDGLGE SLDSEVLTKV ETPFQANGGL
KLLKGNLGRA VIKVSAVQEA HRFVEAPAVV IDDQNKLEAI FQAGDLEKDC VVVVKGQGPK
AIGMPELHKL TPILGTLQDR GFKVALLTDG RMSGASGKVP AAIHLTPEAL DGGLIAKVQN
GDLIRVDALT GELTLLVADE EIAAREAEKV DLRSTSYGMG RELFGALRSN LSSPETGARC
TSAIDENY
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