| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2065 |
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| Symbol | |
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| ID | 5614116 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2499849 |
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| End bp | 2501222 |
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| Gene Length | 1374 bp |
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| Protein Length | 457 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640932962 |
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| Product | NadC family transporter |
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| Protein accession | YP_001473802 |
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| Protein GI | 157375202 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG0471] Di- and tricarboxylate transporters |
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| TIGRFAM ID | [TIGR00785] anion transporter |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.931902 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.00141864 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAATAGTC TCTCTCTCGC CATAAAAGAT TGGTTGTTAC ACCGCAAGAG TTTGATCTTT
CTTGTCGATG CACTCCTGTT TTTGGTCATG TTAAATACAC TGCCATTTCA AGACGATATA
GTGATAGGTC TCAGCCTGCT CACCTTTATT GCCATATTAT GGCTGACTGA GGCCATTCAC
GTATCGATCA CCGCCATATT CGTTCCTCTG CTTGCTGCGG GACTCGGTGT CCTAGACACT
CCTCAGGCCC TTAGCAACTT CGCCAACCCC ATCATATTCC TGTTTCTTGG CGGCTTTGCT
CTTGCAGCCG CCCTGCACCG ACAGCGATTA GATAAAGTCA TAGCCGACAA AGTGCTGCAA
CTCGCAAACG GACAGATGAA TATTGCAGTC ATGATGCTAT TCGCAGTGAC AGCCATTCTC
TCTATGTGGA TCAGTAACAC GGCGACAACG GCTATGATGT TGCCATTAGT GCTGGGTATT
CTCGCTAAAG TCGATGACAA GAGTGATCAT AACACCTATG TTTTTGTACT GCTGGGAATC
GCTTATTGTG CCAGTATCGG TGGAATTGCC ACTATCGTTG GCAGTCCACC CAATGCAATC
GCCGCTGCCG AGGTTGGACT GAGTTTCACC GAGTGGATGA TGCTGGGCTT ACCGATAACT
TTGATTCTGC TCCCTATCGC AGTCAGCCTG CTTTACCTGA TGTTAAAGCC AAATCTTCGT
CACACCTTCA ACATTCCCCG TGAACAGGTC AAATGGAGCA GTGCAAAAAT TATCACTTTT
ATCATCTTCG GCATAACCGT AACTTTGTGG ATATTCAGTA AGCCACTCAA TGCCTACCTT
GGTGGCTATA GCAGATTTGA TAGTCTGGTC GCCCTCTTTG CTATCATCAT GCTGAGCCTT
GCCAGAGTCG TAAAATGGCA AGACATAGAT AACACGACAG ACTGGGGAGT ATTACTGCTA
TTTGGTGGAG GGATCTGCCT CAGTAATGTA CTAAAAGAGA CCGGCACCAG TGTATTTCTG
GCCCAAAGCT TAAGTGAATA CCTGCAGCAG GCTGATCTGT TTGTGATCCT TTTAATGGTA
GTGACCTTTG TCGTTTTCCT GACAGAATTT GCCAGCAACA CCGCAAGTAC GGCACTATTA
GTCCCTATAT TTGCCTCAAT AGCGGAAGTG CTGGGGGTAT CACCTGTGAT CCTGTCGGCA
CTGATAGGTA TCAGTGCCTC ATGTGCCTTT ATGCTACCGG TCGCCACGCC GCCGAACGCG
ATAGTATTTG GCTCAGGTCA TATCAAACAG CGAGAGATGA TGAGAGTGGG GGTTATTCTT
AATCTTATCT GTATCGTGAC CCTATCCACC TTTGTCTGGT TATTTTGGCA GTAA
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| Protein sequence | MNSLSLAIKD WLLHRKSLIF LVDALLFLVM LNTLPFQDDI VIGLSLLTFI AILWLTEAIH
VSITAIFVPL LAAGLGVLDT PQALSNFANP IIFLFLGGFA LAAALHRQRL DKVIADKVLQ
LANGQMNIAV MMLFAVTAIL SMWISNTATT AMMLPLVLGI LAKVDDKSDH NTYVFVLLGI
AYCASIGGIA TIVGSPPNAI AAAEVGLSFT EWMMLGLPIT LILLPIAVSL LYLMLKPNLR
HTFNIPREQV KWSSAKIITF IIFGITVTLW IFSKPLNAYL GGYSRFDSLV ALFAIIMLSL
ARVVKWQDID NTTDWGVLLL FGGGICLSNV LKETGTSVFL AQSLSEYLQQ ADLFVILLMV
VTFVVFLTEF ASNTASTALL VPIFASIAEV LGVSPVILSA LIGISASCAF MLPVATPPNA
IVFGSGHIKQ REMMRVGVIL NLICIVTLST FVWLFWQ
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