| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2058 |
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| Symbol | |
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| ID | 5611687 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2493092 |
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| End bp | 2494318 |
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| Gene Length | 1227 bp |
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| Protein Length | 408 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640932955 |
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| Product | NAD/FAD-binding protein-like protein |
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| Protein accession | YP_001473795 |
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| Protein GI | 157375195 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2907] Predicted NAD/FAD-binding protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00023874 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.0560685 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGGTTTG CGATCATTGG TGGGGGTAGC AGTGGCATGG TGACAGCCTA CTATCTGAGT
AAGAAAGGCC ACTCGGTTAC CGTATATGAG AAGCAAGCCA TCTTAGGCGG CCATATACGC
ACCGTAAACA AAAATGTCGA AATAGCCAGC ATCGCTCCCG GCATGGTTTT GGAAGGTGGA
GTCGTCGAGT TTTCGAGTAA CTTTAAGCAC TTCCTTGCAC TGATGGATGA ACTTGACGTT
GAACTGGAAC CCTTGAAAGT CGGTTCTGCC CTGTTCCGCC GTAATAAGAA GCGCTTTCTT
TCACCTAGGG TGATCACGGG AAATATTCGG GGAATGAGCT TCATATTGGA GTTTATTAAG
CTCGCTTTTG TTTACCTGTC TGCAAACTGG CTCTTGTTGC AGATATATTT AAAACCCTCC
TCTTTGCTCA GGGATAAGCC TTTTTCAGAC TACGTAAGTA AAAAACAGGT AAAAAATACC
TGGTTAAAAC TATTTACTAT GTATTGTTTC TCTATTCCCT ATAAAACCAT CATGAAAATT
CCAGCGGAAT TGGCGTTTAA TATTTTCCGG CGATATTTTT GGGCTGATTG GAAACGAATA
GATGGCGGTG TCTACACCTA CATCGAGAAA ATTGAGCACC TGTTAAATGG TAAAGTGATA
CGCAATGCGG ACATTGAGGG AATAAGCCGT TCAGATGCCG GGATAGTATT GAGGTTCAGG
GATAACACTG AAGTAGATTT CGATAAACTG GTTTTAGCCG TCCCTCCTGA TCAGGTTCTG
GCACTTTTAT CCGATCCTAC TGAGCGCGAG TTACAATTTT TCGGTCCATG GAAAAAGAAT
ATTGCCAGAA CCGTCCTGCA TAGGGATCCT CTGGTTTACC AACGCTATGG CATAGCCCAT
CCATCTGAGT TTGATTTTTT CCAGACCAAA GACGGATGGG GCTACAACGC CAGCCTAAGC
CGGATCTGCG GCTTATCCTC ACAGCAGCAC TATAGCTTGG CCTACAATAT TGATAGTTTG
ATCGCAAAAG AAAATATCAT TCAATCCTTT GAACATCACA CCCCTCTCTA TAGCGTCGAC
GCGTTTCATT ATCGTCGAAA TATCATCGAC AACAACGGCG ATAATCACAC TTTTCATGTC
GGCGCTTACC TCTATGACGG TCTACAGGAA GGTGCCGTTC TCTCGGCAAA AAAAGTAGCC
GAACTAGTAG GAAAAATTAA CACTTAA
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| Protein sequence | MRFAIIGGGS SGMVTAYYLS KKGHSVTVYE KQAILGGHIR TVNKNVEIAS IAPGMVLEGG
VVEFSSNFKH FLALMDELDV ELEPLKVGSA LFRRNKKRFL SPRVITGNIR GMSFILEFIK
LAFVYLSANW LLLQIYLKPS SLLRDKPFSD YVSKKQVKNT WLKLFTMYCF SIPYKTIMKI
PAELAFNIFR RYFWADWKRI DGGVYTYIEK IEHLLNGKVI RNADIEGISR SDAGIVLRFR
DNTEVDFDKL VLAVPPDQVL ALLSDPTERE LQFFGPWKKN IARTVLHRDP LVYQRYGIAH
PSEFDFFQTK DGWGYNASLS RICGLSSQQH YSLAYNIDSL IAKENIIQSF EHHTPLYSVD
AFHYRRNIID NNGDNHTFHV GAYLYDGLQE GAVLSAKKVA ELVGKINT
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