Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2055 |
Symbol | |
ID | 5612382 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 2489710 |
End bp | 2490279 |
Gene Length | 570 bp |
Protein Length | 189 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 640932952 |
Product | hypothetical protein |
Protein accession | YP_001473792 |
Protein GI | 157375192 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.00247576 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.129841 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACACTTT TTAAATTTAT CGCAGCTTCT CTCCTTTCTT TTGTCTGTGT TTTACAGCCA GCAGTAGCTA TGCCAGAAGA TAACGTGGCA CTCAATCAAT TTTATACCCA ATTTTCTCAG GCATTTGAGC ATCTCGATGC CGATCTGGTA AAGAGTATTT ACGCCGAAGA CGCTTGCTAT ATACCTGAAA ATCAGAGTAA AGAGATCACG ATGGGGCGAA AAAACATTAT CGCTCTGTAC AAGAAGTTTT TTGGCAAGAT CAAACACAAA GAAGCACGAA TTGAGGTCGA TTTCAGAGTC GTAGAGCGTC AGATGGAGAC GACTAATGCA ACCGATATTG GCTACTATCT GATTCGTTTT TACCCTCCTG TAGATGCTGA AGAACCTGTC AGCGAATTTG CCGGAAAATT TGTCACCGTC TCCAAGAAAA ATGAGGACGG AAAATGGTAT TTGACCGTCG ATACCAATAA CCGTGCTGAA CCTCCCTTTT ACTACAATGC AAAACCTTCT CCAAATCTGT ATTATGGCCG TCAATTTACG CCGTTAGCTA CAGAGAACGA TGACAACTAA
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Protein sequence | MTLFKFIAAS LLSFVCVLQP AVAMPEDNVA LNQFYTQFSQ AFEHLDADLV KSIYAEDACY IPENQSKEIT MGRKNIIALY KKFFGKIKHK EARIEVDFRV VERQMETTNA TDIGYYLIRF YPPVDAEEPV SEFAGKFVTV SKKNEDGKWY LTVDTNNRAE PPFYYNAKPS PNLYYGRQFT PLATENDDN
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