Gene Ssed_2055 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_2055 
Symbol 
ID5612382 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp2489710 
End bp2490279 
Gene Length570 bp 
Protein Length189 aa 
Translation table11 
GC content42% 
IMG OID640932952 
Producthypothetical protein 
Protein accessionYP_001473792 
Protein GI157375192 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00247576 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.129841 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACACTTT TTAAATTTAT CGCAGCTTCT CTCCTTTCTT TTGTCTGTGT TTTACAGCCA 
GCAGTAGCTA TGCCAGAAGA TAACGTGGCA CTCAATCAAT TTTATACCCA ATTTTCTCAG
GCATTTGAGC ATCTCGATGC CGATCTGGTA AAGAGTATTT ACGCCGAAGA CGCTTGCTAT
ATACCTGAAA ATCAGAGTAA AGAGATCACG ATGGGGCGAA AAAACATTAT CGCTCTGTAC
AAGAAGTTTT TTGGCAAGAT CAAACACAAA GAAGCACGAA TTGAGGTCGA TTTCAGAGTC
GTAGAGCGTC AGATGGAGAC GACTAATGCA ACCGATATTG GCTACTATCT GATTCGTTTT
TACCCTCCTG TAGATGCTGA AGAACCTGTC AGCGAATTTG CCGGAAAATT TGTCACCGTC
TCCAAGAAAA ATGAGGACGG AAAATGGTAT TTGACCGTCG ATACCAATAA CCGTGCTGAA
CCTCCCTTTT ACTACAATGC AAAACCTTCT CCAAATCTGT ATTATGGCCG TCAATTTACG
CCGTTAGCTA CAGAGAACGA TGACAACTAA
 
Protein sequence
MTLFKFIAAS LLSFVCVLQP AVAMPEDNVA LNQFYTQFSQ AFEHLDADLV KSIYAEDACY 
IPENQSKEIT MGRKNIIALY KKFFGKIKHK EARIEVDFRV VERQMETTNA TDIGYYLIRF
YPPVDAEEPV SEFAGKFVTV SKKNEDGKWY LTVDTNNRAE PPFYYNAKPS PNLYYGRQFT
PLATENDDN