| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2053 |
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| Symbol | |
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| ID | 5611308 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2487012 |
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| End bp | 2489180 |
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| Gene Length | 2169 bp |
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| Protein Length | 722 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640932950 |
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| Product | putative diguanylate phosphodiesterase |
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| Protein accession | YP_001473790 |
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| Protein GI | 157375190 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.172491 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.176353 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAAGAAAC GTAAGTATCA ACACTTATTG GAATTGATCG TTAATTCCAA AGCCAAACAA
GAAGGTGATT TTCAAAAGAC GGCCGAACTA GCCACAGAGC TTCTGTGTCA GCAGCTCCAT
GTCACGCACG TCGGTGTATG CATCCTCTCT TGTGATAACA ACGAAATTAG TAACATAGCT
AATTATGGCT CCTTGCTGTC CGACATTTTT TTACGACCTG CCCCCCTCGA TTGTCCTCAC
TATATCAGCG AGCTTAAAAA TCAGCGTCTC ATCGATGCGA CCGATATTGA TACCGATGTA
AGGCTCGATG AGCTAGCTTC GGTCTATTTT GCCCCCAAGG GGATCAAGTC CACATTAGAT
ATAGCAATCA GAATTAACGG GCATCTGGAA GGCGTGCTCT TTCTCGAGAG AAAAGATCAT
TTTCACTGGT CAGACTCCGA AATCCATATC GCATCTCAAG TTGCCGATCA ATTGGCATTA
ACGTTAGCGA CGCGCAATGC CTATGAAAAA GATGAAAAGC TCACGTTATT TTTAAGTGCG
GCCGAACAAT CGGAACAGAT CAGTATGTTA GTCAATCTTC ATACCGATAT TATTGAATAT
GTAAATCAGG CTCATGAAGA GATATCGGGA GCCTCTAAAA AACAGGTCAT TGGCCGCTCG
TTCAAACATC TCGATTTTGT TAAGCAACAT CCCGAACAGG CCATGGTGAC ATTGGCAAAA
GTTCGAGAGG GTAAGTTTGC TAAAGGCGAC TGTAAAATTA CCCGCAAGGA TGGGTCCACC
TATTGGTTAA GGTATTCGGT TAAGCAATTT ATTACAGAAA GAGGCAACCA TTTTGCGTTA
GTTAATGCCG AAGATTGCTC CGAAGAAGTA AGGTACCAAT CTGAGTTAGA ACGTTTGGCA
TGGCATTGTG GTTTAACAGG CTTATACAAT CGTACCTATT TTAATCGAGA ACTTGAAAAA
ACGACGAAGG GTCAGCTCAT TTTGATCGAC CTTTGTGGCT TTAAGCGATT TAACGATACC
TATGGACACG AGAGTGGCGA TATTCTGCTT ATCGAAGTCG CACGTAGGCT GAAACATTTT
GCCAATGTAA ACCATACCGA TCAAATCGCG CGTGTCGGTA GTGACGAGTT CGCCATTATC
CTGCCAGAGC AGAGCGAAGC CGATATGGAA TACATTATCG CTAGGTTATA TCGCCAGCTG
ATCATGCCTG TGACCATAGG TCGAGAGCAT ATCGACCCAA AACCCGCTCT GGCTATTGTC
GATATTAATT CAGTCGAAGA GCTGTTTTTG CCCTTGGCAT GTGCCGATAT CGCACTACAA
TATGCGAAAA AGAAACAGGG TGATACGATT CAGATCTTCA ATAATGCATT ACTCAATGCC
TTTAAAGATA ACTCTCAAAT TGAACGGGAT CTGCAAACTG CGTTGCGAGG CAGGGAGTTT
GAACTCTATT ATCAGCCACT GAAAGATCTC CAGAAGAAGG CCTATATTGG CGCCGAGGCC
CTTATTCGTT GGCATCACCC TAAGAAAGGG GTGTTGTACC CTGGTGCGTT TATCGATATA
GCGGAACAGA CAGGCATGAT CAATGCCATC GGTTCCTGGG TACTCGAGGC GGCCTGCAGA
CAGCTTAACC TATGGCAACA CCATAAAATT GATATATCTA TGCACGTTAA TGTGTCCGCA
AGGCAGTTTT TTAGCGGCAA TTTGTATGAA CAGGTATGGC AGTTAGTCAC TCGTTATCGC
TTGAAACCGG GAACTTTGAT TTTGGAGATC ACCGAAACAG AGTTGATGGA AGATATCAAA
AATGCCACGA AATTGTGTCA GGAGCTTTCT GAGCTCGGTG TCGGTCTTGC AATCGATGAC
TTCGGCACCG GTTATAGCTC TATGCGATAT CTGAAACAAT TTCCCATCAG TAAGCTCAAA
ATTGACCGCT CTTTCATATC TGATTTAACG ATAAGTCGTG AGAGTAGGGA GATTGTGAGT
GCGATTATTG CAATGGCATC TGCGCTAAAT ATCTCCTTGA CGGCCGAAGG AGTGGAAACT
CAGGAGCAGG AGAGTTTCTT GTCCGATCAT AAATGCCATC AGGCTCAAGG TTTCCTCTAT
AGTCCTGCGT TAAGAGAATC TGAATTTAGT CGATTTTTAT TTCAAGCGGA ACCCGAGTTG
ATCCACTAG
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| Protein sequence | MKKRKYQHLL ELIVNSKAKQ EGDFQKTAEL ATELLCQQLH VTHVGVCILS CDNNEISNIA
NYGSLLSDIF LRPAPLDCPH YISELKNQRL IDATDIDTDV RLDELASVYF APKGIKSTLD
IAIRINGHLE GVLFLERKDH FHWSDSEIHI ASQVADQLAL TLATRNAYEK DEKLTLFLSA
AEQSEQISML VNLHTDIIEY VNQAHEEISG ASKKQVIGRS FKHLDFVKQH PEQAMVTLAK
VREGKFAKGD CKITRKDGST YWLRYSVKQF ITERGNHFAL VNAEDCSEEV RYQSELERLA
WHCGLTGLYN RTYFNRELEK TTKGQLILID LCGFKRFNDT YGHESGDILL IEVARRLKHF
ANVNHTDQIA RVGSDEFAII LPEQSEADME YIIARLYRQL IMPVTIGREH IDPKPALAIV
DINSVEELFL PLACADIALQ YAKKKQGDTI QIFNNALLNA FKDNSQIERD LQTALRGREF
ELYYQPLKDL QKKAYIGAEA LIRWHHPKKG VLYPGAFIDI AEQTGMINAI GSWVLEAACR
QLNLWQHHKI DISMHVNVSA RQFFSGNLYE QVWQLVTRYR LKPGTLILEI TETELMEDIK
NATKLCQELS ELGVGLAIDD FGTGYSSMRY LKQFPISKLK IDRSFISDLT ISRESREIVS
AIIAMASALN ISLTAEGVET QEQESFLSDH KCHQAQGFLY SPALRESEFS RFLFQAEPEL
IH
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