| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2050 |
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| Symbol | |
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| ID | 5611305 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2483486 |
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| End bp | 2484547 |
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| Gene Length | 1062 bp |
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| Protein Length | 353 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640932943 |
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| Product | pyridoxal-5'-phosphate-dependent enzyme, beta subunit |
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| Protein accession | YP_001473787 |
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| Protein GI | 157375187 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0031] Cysteine synthase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.779914 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.200044 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCAAATT CATGGATTAA TCAGGCTATC GCCACCATTG AGGCCGATTA TCAACGTAGT
GCAGACACCC ATCTGATCAA GCTTGATATT CCGGCACTCG AAGGGATAGA TATCTACCTT
AAAGATGAGA GTACCCATCC AACGGGAAGC CTCAAACACC GATTGGCTCG TTCTCTTTTT
CTTTATGCAC TCTGCAATGG CTGGATTAAG AGTGACACGA CCATTATTGA GTCATCATCG
GGAAGTACTG CGGTATCAGA GGCCTACTTT GCACGACTGT TAGGTTTAGC CTTTATCGCA
GTCATGCCAC GTTCGACGGC AAAGAAGAAA GTCCAGCAAA TTGAATTCTA TGGTGGAACG
TGTCACTTCG TCGAGCACTC CAGTGAGATC TATGCAGAGT CTGAGCGGTT AGCCAATAGC
TTAAACGGCC ACTATATGGA TCAGTTCACC TTTGCTGAGC GGGCAACAGA TTGGCGTGGC
AATAATAATA TTGCCAACTC CATTTTTGAT CAGATGAGTC GCGAGCCGCA CCCAATCCCG
GATTGGATCG TGATGAGCCC GGGTACAGGG GGAACCTCAG CCACTATAGG GCGGTATATA
CGTTATCAAC AGCTCGAAAC AAAACTCTGT GTTGTTGACC CTGAAAACTC AGTTTTCTTC
GACTACTACC AAAGCGGAGA TAAGAGTGTT ACCTCCTCAA AGGGCAGCAA GATTGAGGGT
ATAGGTAGGC CTCGAGCCGA ACCTTCATTT ATACCCGGCG TCGTCGATGC CATGGTTAAA
ATTCCGGATG CAGCCTCGAT TGCGACCATA TTTTGGTTGG AAAAAATGAT AGGTCGAAAG
GTGGGAGCCT CAACGGGTAC TAACCTTTAC GGCATTTTGC AGATTGCGAC TCAAATGATC
GCTGAGGGGA AAAAAGGATC CTTGGTAACC CTGTTATGTG ACTCAGGAGA TCGCTACCTT
GACACCTATT ACAACCCACA ATGGGTAGAG GCTAACATAG GCGATCTTTC TCACTATGAG
GCTAAACTGC AACAGGTTAG CCTCACCGGG AAGCTTGATT AG
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| Protein sequence | MSNSWINQAI ATIEADYQRS ADTHLIKLDI PALEGIDIYL KDESTHPTGS LKHRLARSLF
LYALCNGWIK SDTTIIESSS GSTAVSEAYF ARLLGLAFIA VMPRSTAKKK VQQIEFYGGT
CHFVEHSSEI YAESERLANS LNGHYMDQFT FAERATDWRG NNNIANSIFD QMSREPHPIP
DWIVMSPGTG GTSATIGRYI RYQQLETKLC VVDPENSVFF DYYQSGDKSV TSSKGSKIEG
IGRPRAEPSF IPGVVDAMVK IPDAASIATI FWLEKMIGRK VGASTGTNLY GILQIATQMI
AEGKKGSLVT LLCDSGDRYL DTYYNPQWVE ANIGDLSHYE AKLQQVSLTG KLD
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