| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2046 |
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| Symbol | |
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| ID | 5614059 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2479256 |
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| End bp | 2481283 |
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| Gene Length | 2028 bp |
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| Protein Length | 675 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640932939 |
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| Product | excinuclease ABC subunit B |
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| Protein accession | YP_001473783 |
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| Protein GI | 157375183 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0556] Helicase subunit of the DNA excision repair complex |
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| TIGRFAM ID | [TIGR00631] excinuclease ABC, B subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.346873 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGGAAGA ACTCTGTGAC AGAATCTACG TTTCAACTTG AATCTCAATA CAGTCCGGCA
GGGGATCAAC CTAAAGCAAT TGAAAAGCTG GTTGATGGTA TAGAGTCCGG AGTTGCGTGC
CAAACTTTAC TCGGTGTAAC CGGCTCAGGT AAGACGTTTA CTATTGCTAA TGTGATCAAG
CAGCTAGCCA GGCCTACTAT TATCATGGCG CCTAATAAAA CCTTGGCCGC TCAATTATAT
GGTGAGATGA AGGAGTTTTT TCCACACAAT GCGGTTGAGT ATTTTGTCTC CTATTACGAT
TATTACCAAC CCGAAGCCTA TGTGCCATCG ACAAATACCT TTATAGAAAA AGATGCTTCG
GTTAATGCAC ATATAGAACA GATGAGACTC TCAGCAACAA AAGCCCTGTT AGAACGCAAA
GATGTGGTTC TCATCGCGTC AGTATCGGCC ATCTACGGTC TGGGCGATCC CGATTCTTAC
TTGAAGATGT TATTACACCT GAGACAAGGT GATTTCATGG ATCAGAGAGA TATCTTAAAG
CGGTTAAGCG AGTTGCAATA TACCCGTAAT GATATCGAAT TGAAGCGGGG GACTTATCGA
GTCAGAGGGG AAGTCATCGA TATTTTCCCT GCCGATTCGG ATAAAGAGGC TATTCGTGTT
GAGCTGTTTG ATGTAGAGAT AGAACGTTTA AGTTTATTCG ATCCGCTAAC GGGTCATATC
AGTAAGCGCA TTGCCAGAAC CACCATATAC CCTAAGAGCC ATTACGTCAC ACCACGTGAG
AAAATTCTAG CTGCGACCGA AGAGATCAAG GAGGAGTTAA GGATAAGGAA GAAGCAACTA
TTAGATAATA ATAAGCTGAT AGAGGCGCAA AGAATTAACG AACGTGTGCA ATATGATATC
GAGATGATGA CCGAGCTGGG TTACTGCTCC GGTATTGAGA ACTATTCCAG ATACCTATCC
GGTAGAGCTG AGGGTGATGG TCCGCCGACT CTACTTGATT ATCTTCCCGA TGACGGACTG
TTGATCATAG ATGAGTCACA TGTGACCGTT CCGCAAATAG GTGCTATGTA CAAAGGGGAT
AGATCCAGAA AATCTAATCT GGTCGAGTAT GGGTTTCGAT TACCATCTGC ATTGGATAAC
CGGCCATTGA AGTTTGAAGA GTTTGAAAGA CTGATGCCGC AAACAATCTA TGTGTCGGCA
ACACCCAGTC AATACGAGGT AGATAAGAGT GATGGTGAGG TCGCCCAGCA GGTCATCAGA
CCAACAGGGC TACTGGATCC TGTGCTGGAA GTTCGTCCGA TCGCTATTCA AGTTGATGAC
TTACTTTCTG AAGTTGCTCA ACGAGTAAAG GTAAATGAGC GTGTACTCGT GACAACCTTG
ACTAAACGTA TGTCAGAAGA CCTGTCTGAA TACCTCGATG AGCACGGGAT AAAGGTCAGA
TATCTGCACT CTGATATCGA TACGGTTGAA CGAGTGGAGA TCATCAGAGA CCTACGTTTA
GGTGTGTTCG ATGTGCTGGT TGGAATTAAC TTGTTAAGAG AAGGGTTGGA TCTACCTGAG
GTTTCGCTGG TATGCATACT CGATGCCGAT AAAGAGGGCT TCTTACGCTC AGAACGTTCA
CTCATTCAAA CCATTGGCCG CGCCGCGCGA AATATTAACG GCAAGGTTAT CCTCTATGCC
GATAAGATAA CGGATTCGAT GTCCCGTGCG ATGGGGGAGA CCGAGCGACG TCGTAAACTA
CAGCATCAAT TTAATCTCGA TAATGGCATC GTTCCTAAGG GAGTATCTAA GAAGATCACC
GACGTTATGG ATGTGGGTGA CAAGAGCGCA GATGGACAAG ATGTTGACAA TAACAAGGTT
GCTGAGTCCA GGGCGCCTTA CGGCGGGCCC GACATTGCGA CACTCAGCCA TCAAATGGAC
GCATTAGAGA AACAGATGCA TGAGCATGCT AAGAACCTTG AGTTTGAACA GGCGGCTGCA
CTTCGCGATC AGGTTGCAAA ATTGCGAGAG GCACTGATTA AAGCATAA
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| Protein sequence | MGKNSVTEST FQLESQYSPA GDQPKAIEKL VDGIESGVAC QTLLGVTGSG KTFTIANVIK
QLARPTIIMA PNKTLAAQLY GEMKEFFPHN AVEYFVSYYD YYQPEAYVPS TNTFIEKDAS
VNAHIEQMRL SATKALLERK DVVLIASVSA IYGLGDPDSY LKMLLHLRQG DFMDQRDILK
RLSELQYTRN DIELKRGTYR VRGEVIDIFP ADSDKEAIRV ELFDVEIERL SLFDPLTGHI
SKRIARTTIY PKSHYVTPRE KILAATEEIK EELRIRKKQL LDNNKLIEAQ RINERVQYDI
EMMTELGYCS GIENYSRYLS GRAEGDGPPT LLDYLPDDGL LIIDESHVTV PQIGAMYKGD
RSRKSNLVEY GFRLPSALDN RPLKFEEFER LMPQTIYVSA TPSQYEVDKS DGEVAQQVIR
PTGLLDPVLE VRPIAIQVDD LLSEVAQRVK VNERVLVTTL TKRMSEDLSE YLDEHGIKVR
YLHSDIDTVE RVEIIRDLRL GVFDVLVGIN LLREGLDLPE VSLVCILDAD KEGFLRSERS
LIQTIGRAAR NINGKVILYA DKITDSMSRA MGETERRRKL QHQFNLDNGI VPKGVSKKIT
DVMDVGDKSA DGQDVDNNKV AESRAPYGGP DIATLSHQMD ALEKQMHEHA KNLEFEQAAA
LRDQVAKLRE ALIKA
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