| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2045 |
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| Symbol | |
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| ID | 5610786 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2475230 |
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| End bp | 2477128 |
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| Gene Length | 1899 bp |
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| Protein Length | 632 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 640932931 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001473782 |
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| Protein GI | 157375182 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.289313 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCTTAA CAAAAATATT TCAAAGCTTT TTATTTGTCC TCTTTGTCGG TATCTGTTTC
CTCGTATACG TAGAACAAAC CCATTTACTC TCAGAAAAAG CCCATTCCAG ACTCGCACTT
TATCAAAATA GCTTTAATAC CGAACAAACC TTGCCGTCCC ATGGCAATGA ACTCTTAGCC
GAATTAGAAA AACAGGACAA ATTTCAATTC TTTCAATATA TCCATAGTAC GGATAGCAGC
TATAACCTTA CCCAAGGCGA GTTAATTTCG GTTTCTAATC ACCCTCTGGC TCCACTATTT
CCAATAGAGA TGTCTGATAC CCGCACTTTC GAAGAGGGCA GACTACAGAT AAAGCTTTTC
AAAGAAGATA TCGTCGATGC TGCAATAGCT AATTTTCAAA ATGCAATAAT CATCTTGGGA
ACGGCGTACC TGCTTGTTGC CGTCACTTTT TTTCTCTTGA TGTTAAGGCT TAAGCGGGCG
ATCAGATACT CGGCTAACTA TATTGCAGGC CTTTCAAATC ACTCATTTGT CGCTTTTGAA
GCCTCAAAAC TCGGCTCAGA GTTAAAACCT ATTGGACTGG CGCTGGAAAA GTTAAAAGTA
AAGCTCAAGA CGAACTTAGA ACAAGCCGCC GATGAGAATG AAAAGTTGGC AAAAGTCGCT
TATCAAGACC CTGTTACCGG CTTAGCCACA CGCACCGTAT TTACACAAAA ATTAGAATCT
TTTTCAGAAC TGAGTAAAGA GCACATTGGT CTGATGGCGA TTGTAAAAGC CTCTGAATTG
GCACAAGTAA ATGATAACTT TGGTCGTACT GCCGGTGACG ACTATTTATT AGAAGTCGCC
AACTGCATTC GCAAATCTCT GAGTGATTTT CCGGACTCAG AATGCTACAG AATTTCGACA
GCCGATTTTG CTGTGTTCAT TCCAGGTCTT ATCCTTAAAG ATGGCATACC CTTTCTTGAA
TCATTAAAAT CGCTATTTGA CGAATACCAA CAATCCCTGA ATACCGAATC CGTCGCTCAT
GTTGGGCTTG TGCCTTATCA ACACGACAGT GACACGGTCA AATTACTCAC ATTGGCAGAT
ACGGCGGTAA GCATTGCCCA AACATTGGGA CCAAACTGTT TTTATATGCA GGATAAGTTT
AATGGCGATG AGGTATACGG GGACACACGC TGGAAAGAGG CCATCGATGA CCTTATTCAC
AGACAAGCTC TTAAATTTTA TCAGCAACCG ATCCACCCCT GTAGAACCGA GGTATTAGTT
TATAAAGAGT TGCTGACCCG TTTCTATAAC AGTGAAGGGA AGTTTCTACC AACCACTACG
GTTATCGCAA TGGCTGAGCG CCACGGCATG ATGTTAGATC TCGATAAACT CATCATCATA
AACACGATTA AGATGCTGAT TAATACCCCT GCCATGTCCG GAGCCTACGG CATAAATATT
AGTGCCTCTT CTATTATGCA AGATGATTTT GTCGCCTGGA TTAAAGATCT ACTCGCAAAA
CAACGTCATA TCGCAGCCAG ATTAGTATTT GAAGTCAATG AATCTGGCAT GCAATCCAAT
TTATCTGCCA GCCATAAGTT TGTTCGAATT ATGCATAGCG TTGGTGCCAG GGTTTCAGTC
GAACACTTTG GTATGGGCTT TACCTCCTTT AAATTTTTTA AAGAGGTGAG ACCCGACTAT
ATCAAACTCG ACGGAAGCTA CACCGATGGG ATTGTTGAGG ACACTAACAA TAAGTTTTTC
ATTAAGATGA TCGTCGATAT AGCCAGAAGG CTCGGTATCA GGGTTATTGC GACGAGTGTT
GAACGTCAGG AAGAGAAGCT GGTATTGGAG AGAATGCACG TCGATGGTTT ACAAGGTTAC
TATATTTCAC AACCCCAAGC TGCACAGACG ATAGAGTAA
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| Protein sequence | MSLTKIFQSF LFVLFVGICF LVYVEQTHLL SEKAHSRLAL YQNSFNTEQT LPSHGNELLA
ELEKQDKFQF FQYIHSTDSS YNLTQGELIS VSNHPLAPLF PIEMSDTRTF EEGRLQIKLF
KEDIVDAAIA NFQNAIIILG TAYLLVAVTF FLLMLRLKRA IRYSANYIAG LSNHSFVAFE
ASKLGSELKP IGLALEKLKV KLKTNLEQAA DENEKLAKVA YQDPVTGLAT RTVFTQKLES
FSELSKEHIG LMAIVKASEL AQVNDNFGRT AGDDYLLEVA NCIRKSLSDF PDSECYRIST
ADFAVFIPGL ILKDGIPFLE SLKSLFDEYQ QSLNTESVAH VGLVPYQHDS DTVKLLTLAD
TAVSIAQTLG PNCFYMQDKF NGDEVYGDTR WKEAIDDLIH RQALKFYQQP IHPCRTEVLV
YKELLTRFYN SEGKFLPTTT VIAMAERHGM MLDLDKLIII NTIKMLINTP AMSGAYGINI
SASSIMQDDF VAWIKDLLAK QRHIAARLVF EVNESGMQSN LSASHKFVRI MHSVGARVSV
EHFGMGFTSF KFFKEVRPDY IKLDGSYTDG IVEDTNNKFF IKMIVDIARR LGIRVIATSV
ERQEEKLVLE RMHVDGLQGY YISQPQAAQT IE
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