| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2042 |
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| Symbol | |
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| ID | 5614007 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2471449 |
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| End bp | 2473977 |
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| Gene Length | 2529 bp |
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| Protein Length | 842 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640932928 |
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| Product | electron transport complex protein RnfC |
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| Protein accession | YP_001473779 |
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| Protein GI | 157375179 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG4656] Predicted NADH:ubiquinone oxidoreductase, subunit RnfC |
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| TIGRFAM ID | [TIGR01945] electron transport complex, RnfABCDGE type, C subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.875859 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCTAACTT TATTTGAACA GATTGATAAA GGAACACTTT GGCGTTCAAT TGGCGGTATC
CACCCCCCGG AGAGAAAGAC CCTCTCAAAC AGAACTTCCA TTGCATCATT GGCCTTAGCC
GATGAGTATA TCGTCCCGCT GAACCAAGTC GGTGAATCGT CAGTCCTCGC TATCTCAGAG
GGCGATTATG TCACTAAGGG CATGCTTTTA ACACGCGGCA CCCACTTTGG TCACCTGCCT
GTTCATGCAC CGACATCGGG TCATGTGACT AAGATTGAAC AGCGTCCCAG TAACCATGCA
TCCGGGCTTC CGGTGCTAAG TTGTGTCATT ACCCCTGATG GGCAGGATAC ACTTACACCT
GATATACATG CCCCACTCTC ATGGAGCGAC ATTGCATCTT GGTCAAACCA AGAGATCTTA
AGAAAAATTC AGGATGCCGG TATCGCAGGT CTCGGCGGCG CGGCATTTCC TACCCATATC
AAGCTCAACC CTGCCAGTGA CATTGAACTG CTGATCATCA ACGCCATTGA ATGTGAGCCA
TACATCACAG CCGATGACAT GCTCATGCGC GAGCATAGTG ATGCGATATG CTTAGGGATC
GCCATTATCC ACCGTCTGCT TCAGCCTAAA CGGCTGATAA TCGCAGTTGA AGATAACAAG
CCTGAAGCTA TCGAAGAGAT GCACCACGCG TTAAACCGCA GTCAACTCCC CAAAGAGGGA
GTCAGGATAA CCAGTGTCCC TACACTTTAT CCTTCCGGCG GCGAGAAACA GTTAATACAG
ATTTTAACCG GTGAAGAGGT GCCTTCAGGT TCTATTCCGG CACAACTCGG GATAGTCGTC
CAAAACATAG CGACCAGCTA CGCTATCACA GATGCGGTCT TAAGAAGCTA CCCGCTTATT
GAACGGGTTG TCACTGTCAC CGGCAATAAC ACATCCAGTC CCGGTAATTA TTGGGTACCT
ATTGGTACAC CAATATCTCA CCTGTTAACT CAGACAGGGT TCAGAGGCAA TGAGACCGAT
AAGGTTATTA TCGGTGGCCC CATGATGGGT TATGCCCTAT ACAATGACAG CGCACCCATC
ATAAAGGGCA GTAACTGTCT ACTCTTGCCC GATAGTAATG AGCTGGCCCC GGCCGCAAAA
GAACTAGCCT GTATACGCTG TGGAGAGTGT GCTCAAGTAT GCCCGGCTCA ACTCTTGCCA
CAACAACTGT TTTGGCATGC AAAAGCCAAA GAATACGATA AAGCCGTCAA TTTCAATCTT
GCAGATTGCA TCGAATGTGG ATGTTGTACC TACGTTTGTC CCAGTAATAT TCCACTGGTC
GAGTATTACA GGATCGCCAA ATCTGCGGTA AAGACGGAAG CTGAAGAGAA GAAACAAGCC
GAACTGGCTA AGCAAAGATT TGAATTGAGA ACTCAGCGGT TAGAGGATGA ACGACTCGCC
CGTGAAGCGA AGCAAAAAGA AGCCGCCGAA CGACGTAAAT CAAATATGTC CACTACAGAT
AAAGATGCCG TAGCTGAGGC CATGGCCAGA ATTAAAGCCA AAAAGGCTGC TTCGGGCTCA
AATGTCCCCA CTAATGCACC AGACACTCCC GATAATAAGC GCAAGGATGT CTCTGCAGCA
ATTGCTCGTG CTAAGGCTAC GAAGGCCGCG CAAAATAAAC CTGATGACGC CTCAGGCCAT
TCACAGCCTA CAGAGGCCAA TTCGGGCGAT GATAAGAAGG CTCAAATTGC TGCAGCAGTT
GCCAGAGCAA AGGCTAAAAA GGCAGCGCAG CAAGATTCTG AAACTGATAG CAATGAACAG
CTGGCGGCTT CTGTAGACGT AAGTAAGCCG TCACAAGAGG TGGTCACCCC CGTCGATGAT
AAGAAAGCTA AGATTGCCGC AGCGGTTGCC AGGGCTAAGG CTAAAAAGGC CGCGCAGCAA
GCCTCTGAAA CTGATAGCAA TGATATGCTG GCGGCTTCTG TAGACACAAG CAAGCCATCA
CAAGAGGTAG CCCCCCCCGT CGATGATAAG AAAGCTAAGA TTGCTGCAGC CGTTGCCAGG
GCTAAGGCTA AAAAGGCCGC GCAGAAAGCC TCTGAAACTG GTAGCGGTGA TGAACTTGTG
ACTTCTGTAG ACATAAGCAA TCCATCACAA GAGGTAGCCC TCCCCGTCGA TGATAAAAAA
GCTAAGATTG CTGCAGCCGT TGCCAGGGCT AAGGCTAAAA AGGCCGCGCA GAAAGCCTCT
GAAACTGGTA GCGGTGATGA ACTTGTGGCT TCTGTAGACA TAAGCAATCC ATCACAAGAG
GTAGCCCTCC CCGTCGATGA TAAAAAAGCT AAGATTGCTG CAGCCGTTGC CAGAGCAAAG
GCTAAAAAGG CCGCGCAGAA AGCCTCTGAA ACTGGTAGCA GTGATGAGCT TGTGGCTTCT
GTAGACGCAA GCGACGCACC ACAAGAGGTA GCTTCCCCGG TCGATGATAA GAAAGCACGG
ATAGCCGCAG CGGTCGCCAA GGCAAAGGCT AAAAAAGCAA TGTTAAAAAC AGAAAGTGAA
AAGGAATAA
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| Protein sequence | MLTLFEQIDK GTLWRSIGGI HPPERKTLSN RTSIASLALA DEYIVPLNQV GESSVLAISE
GDYVTKGMLL TRGTHFGHLP VHAPTSGHVT KIEQRPSNHA SGLPVLSCVI TPDGQDTLTP
DIHAPLSWSD IASWSNQEIL RKIQDAGIAG LGGAAFPTHI KLNPASDIEL LIINAIECEP
YITADDMLMR EHSDAICLGI AIIHRLLQPK RLIIAVEDNK PEAIEEMHHA LNRSQLPKEG
VRITSVPTLY PSGGEKQLIQ ILTGEEVPSG SIPAQLGIVV QNIATSYAIT DAVLRSYPLI
ERVVTVTGNN TSSPGNYWVP IGTPISHLLT QTGFRGNETD KVIIGGPMMG YALYNDSAPI
IKGSNCLLLP DSNELAPAAK ELACIRCGEC AQVCPAQLLP QQLFWHAKAK EYDKAVNFNL
ADCIECGCCT YVCPSNIPLV EYYRIAKSAV KTEAEEKKQA ELAKQRFELR TQRLEDERLA
REAKQKEAAE RRKSNMSTTD KDAVAEAMAR IKAKKAASGS NVPTNAPDTP DNKRKDVSAA
IARAKATKAA QNKPDDASGH SQPTEANSGD DKKAQIAAAV ARAKAKKAAQ QDSETDSNEQ
LAASVDVSKP SQEVVTPVDD KKAKIAAAVA RAKAKKAAQQ ASETDSNDML AASVDTSKPS
QEVAPPVDDK KAKIAAAVAR AKAKKAAQKA SETGSGDELV TSVDISNPSQ EVALPVDDKK
AKIAAAVARA KAKKAAQKAS ETGSGDELVA SVDISNPSQE VALPVDDKKA KIAAAVARAK
AKKAAQKASE TGSSDELVAS VDASDAPQEV ASPVDDKKAR IAAAVAKAKA KKAMLKTESE
KE
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